Parental gene:

ENSCAFG00000008879

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:17:49615044..49626778(-)


>ENSCAFG00000008879
CCCACACCAGTTATCCTGTTAAAAGAGGGGACCGATAGCTCCCAGGGCATCCCCCAGCTTGTAAGTAACATCAGTGCCTG
CCAAGTGATTGCGGAGGCTGTAAGAACCACCCTAGGCCCTCGTGGCATGGACAAGCTGATTGTAGATGGCCGAGGCAAAG
CAACAATTTCTAATGATGGGGCCACAATTCTGAAACTCCTTGATGTTGTCCATCCAGCAGCAAAGACTCTAGTGGACATT
GCTAAATCCCAAGACGCTGAGGTCGGTGATGGTACCACCTCAGTGACCCTGCTGGCTGCAGAGTTTCTGAAGCAGGTGAA
ACCCTATGTGGAAGAAGGTTTGCACCCACAGATCATCATCCGAGCTTTCCGCACTGCCACCCAGTTGGCAGTTAACAAGA
TCAAAGAGATCGCTGTGACCGTGAAGAAGGAAGATAAAGTGGAACAGAGGAAGCTGCTGGAGAAGTGTGCCATGACCGCC
CTGAGCTCTAAGCTGATTTCCCAGCAGAAAGCCTTCTTCGCTAAGATGGTGGTGGATGCAGTGATAATGCTCGATGAGTT
GTTGCAGCTTAAAATGATTGGAATCAAGAAGGTGCAAGGTGGTGCTCTAGAGGAGTCCCAGCTGGTAGCTGGCGTTGCAT
TCAAGAAGACTTTCTCTTATGCTGGGTTTGAAATGCAACCCAAAAAGTACAACAATCCAATGATTGCCCTTTTAAATGTT
GAGCTTGAGCTGAAAGCTGAGAAAGATAATGCTGAAATCAGAGTCCACACGGTGGAGGATTATCAGGCAATTGTTGATGC
TGAGTGGAACATTCTCTATGACAAGTTAGAGAGGATCCATCATTCTGGAGCCAAAGTCGTCTTATCCAAACTCCCCATTG
GGGATGTGGCCACCCAGTACTTTGCCGACAGGGACATGTTCTGTGCTGGCCGGGTGCCGGAGGAGGATCTGAAGAGGACA
ATGATGGCCTGCGGAGGCTCCATCCAAACCAGTGTGAATGCTCTGTCAGCTGATGTGCTAGGCCGCTGCCAGGTCTTTGA
AGAGACGCAGATTGGAGGCGAGAGGTACAATTTCTTCACTGGCTGCCCCAAGGCCAAGACCTGCACTATCATCCTTCGTG
GTGGTGCTGAGCAGTTTATGGAGGAGACAGAGCGGTCTCTGCATGACGCCATCATGATCGTCAGGAGGGCCATCAAGAAT
GATTCAGTGGTAGCTGGTGGCGGGGCCATTGAGATGGAGCTTTCCAAGTATCTGCGGGATTACTCAAGGACCATTCCAGG
AAAACAGCAGCTGTTGATCGGGGCATATGCCAAGGCCTTGGAAATTATCCCACGTCAGCTGTGTGACAATGCTGGCTTTG
ATGCCACAAACATCCTCAACAAGCTGCGAGCTCGGCATGCCCAGGGGGGCATGTGGTATGGAGTGGACGTCAACAATGAG
GACATTGCTGACAACTTTGAGGCGTTTGTGTGGGAGCCAGCCATGGTGCGCATCAATGCCCTGACTGCAGCCTCTGAGGC
CGCCTGCCTTATCGTGTCAGTGGATGAGACCATCAAAAACCCTCGCTCAACAGTAGATGCTCCCCCAGCTGCGGGCCGGG
GACGGGGCCGGGGCCGCCCACACTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 77 .32 RPM
SRP017611_brain 30 .17 RPM
SRP017611_kidney 47 .48 RPM
SRP017611_liver 34 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007937 possible_ortholog 1 retrogene
retro_chof_2313,
Cavia porcellus ENSCPOG00000019869 ortholog_one2many 1 retrogene
retro_cpor_1458,
Echinops telfairi ENSETEG00000009409 possible_ortholog 2 retrogenes
retro_etel_1478, retro_etel_607,
Homo sapiens ENSG00000135624 ortholog_one2many 1 retrogene
retro_hsap_3354,
Gorilla gorilla ENSGGOG00000007766 ortholog_many2many 1 retrogene
retro_ggor_2274,
Macropus eugenii ENSMEUG00000000416 ortholog_one2many 1 retrogene
retro_meug_1995,
Macaca mulatta ENSMMUG00000012448 ortholog_many2many 1 retrogene
retro_mmul_2093,
Nomascus leucogenys ENSNLEG00000010414 ortholog_one2many 1 retrogene
retro_nleu_1175,
Otolemur garnettii ENSOGAG00000009162 ortholog_one2many 2 retrogenes
retro_ogar_2001, retro_ogar_2698,
Pongo abelii ENSPPYG00000012297 ortholog_one2many 1 retrogene
retro_pabe_2760,
Pan troglodytes ENSPTRG00000012060 ortholog_one2many 1 retrogene
retro_ptro_2133,
Rattus norvegicus ENSRNOG00000015630 ortholog_one2many 2 retrogenes
retro_rnor_2179, retro_rnor_535,
Sorex araneus ENSSARG00000011475 possible_ortholog 1 retrogene
retro_sara_539,
Tupaia belangeri ENSTBEG00000002066 ortholog_one2many 2 retrogenes
retro_tbel_3708, retro_tbel_3751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_151 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000008879 retrocopies