Parental gene:

HNRPDL, ENSCPOG00000015619

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_5:6529890..6533181(-)


>ENSCPOG00000015619
GCCGAGGGGTCCAAGATCAACGCGAGCAAGAACCAACAGGATGACGGATATAAAATGTTTATTGGAGGCTTGAGCTGGGA
TACAAGCAAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCA
CTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGCGTTGATAAGGTTTTGGAACTAAAAGAACAC
AAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAAGGGAAAGAACCACCTAAAAAGGTGTTTGTGGG
TGGATTGAGCCCAGATACTTCTGAAGAACAAATTAAAGAGTATTTTGGAGCCTTTGGAGAGATTGAAAATATTGAGCTTC
CCATGGATACAAAAACAAATGAAAGGAGAGGATTTTGTTTCATCACATACACAGATGAAGAGCCAGTCAAGAAATTGTTA
GAAAGCAGATACCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTATATCGGCAGCAACA
GCAACAACAAAAAGGAGGAAGAGGTGCTGCAGCTGGGGGACGAGGTGGTACTAGGGGTCGTGGCCGAGGTCAGGGCCAAA
ACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTAT
AGTGGCTATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGG
TCAGCAGAGCACTTATGGCAAGGCATCTCGAGGAGGTGGCAATCACCAAAATAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP017611_brain 105 .77 RPM
SRP017611_kidney 87 .00 RPM
SRP017611_liver 55 .10 RPM
SRP040447_lung 89 .38 RPM
SRP040447_skeletal_muscle 57 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014804 ortholog_one2one 2 retrogenes
retro_btau_1827, retro_btau_461,
Choloepus hoffmanni ENSCHOG00000000160 possible_ortholog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 possible_ortholog 2 retrogenes
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG00000004251 other_paralog 3 retrogenes
retro_cpor_1516, retro_cpor_1543, retro_cpor_65,
Cavia porcellus ENSCPOG00000020972 other_paralog 1 retrogene
retro_cpor_1078,
Equus caballus ENSECAG00000022692 ortholog_one2one 1 retrogene
retro_ecab_1082,
Microcebus murinus ENSMICG00000001445 ortholog_one2one 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 ortholog_one2one 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 ortholog_one2one 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Oryctolagus cuniculus ENSOCUG00000013805 ortholog_one2one 1 retrogene
retro_ocun_505,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000007178 ortholog_one2one 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG00000011543 ortholog_one2one 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 ortholog_one2one 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 ortholog_one2one 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_264 71.36 74.05
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2. retro_cpor_274 62.65 57.09
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3. retro_cpor_567 71.72 99.31
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4. retro_cpor_1110 71.26 57.09
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5. retro_cpor_1318 75.96 71.28
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Download FASTA sequences of all ENSCPOG00000015619 retrocopies