Parental gene:

BT.69182, ENSBTAG00000014804

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:RefSeq peptide;Acc:NP_001077194]
Organism:Cow (Bos taurus)
Coordinates:6:98983514..98990087(-)


>ENSBTAG00000014804
ATGGAGGTCCCGCCCCGACTCTCCCATGTGCCGCCGCCATTGTTCCCCTCCGCTCCCGCTACTTTAGCCTCCCGCAGCCT
CTCCCATTGGCGGCCGCGGCCGCCGCGGCAGCTCGCCCCGCTCCTCCCTTCGCTCGCTCCCAGCTCCGCCCGGCAGGGGG
CGCGCCGGGCCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCGGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCAGCTCCATACAACGCTCCGCCGCCGCTGCTGCCGCGACTCGGTC
TGCGCGCCAGCACCTTCCGGCCGACCACTCCGCCGCTATGGAAGATATGAACGAGTACAGCAACATAGAGGAGTTCGCCG
AGGGATCCAAGATCAACGCGAGCAAGAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGC
AAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTGGACTGCACGATTAAAACAGATCCTGTTACTGGAAG
ATCACGAGGATTTGGATTTGTGCTTTTCAAGGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGG
ATGGCAAATTGATAGACCCTAAAAGGGCCAAAGCTTTAAAGGGGAAGGAACCCCCAAAAAAGGTTTTCGTGGGTGGATTG
AGCCCAGATACTTCGGAGGAACAAATTAAAGAATATTTTGGAGCCTTTGGAGAGATTGAAAATATTGAACTTCCTATGGA
TACAAAAACAAATGAAAGAAGAGGATTTTGCTTTATTACATATACAGATGAGGAGCCAGTAAAGAAATTGTTAGAAAGCA
GATACCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTATATAGACAGCAACAGCAGCAA
CAAAAGGGAGGAAGAGGTGCAGCAGCTGGTGGGCGAGGTGGTACTAGGGGGCGAGGCCGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCT
ATGGCGGCTATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAG
AGCACTTACGGCAAGGCATCCCGAGGGGGTGGCAATCACCAAAACAATTACCAGCCGTATTAA

Library Parental gene expression (RPM)
ERP005899_liver 155 .44 RPM
ERP005899_muscle 50 .73 RPM
SRP017611_brain 171 .57 RPM
SRP017611_kidney 147 .82 RPM
SRP017611_liver 61 .09 RPM
SRP030211_testis 135 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 other_paralog 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Bos taurus ENSBTAG00000005726 within_species_paralog 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Bos taurus ENSBTAG00000021580 other_paralog 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Choloepus hoffmanni ENSCHOG00000000160 possible_ortholog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 possible_ortholog 2 retrogenes
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG00000015619 ortholog_one2one 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Equus caballus ENSECAG00000022692 ortholog_one2one 1 retrogene
retro_ecab_1082,
Microcebus murinus ENSMICG00000001445 ortholog_one2one 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 ortholog_one2one 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 ortholog_one2one 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Oryctolagus cuniculus ENSOCUG00000013805 ortholog_one2one 1 retrogene
retro_ocun_505,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000007178 ortholog_one2one 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG00000011543 ortholog_one2one 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 ortholog_one2one 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 ortholog_one2one 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_461 93.29 77.86
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2. retro_btau_1827 94.96 61.43
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Download FASTA sequences of all ENSBTAG00000014804 retrocopies