Parental gene:

RPS3A, ENSCPOG00000015569

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:28470956..28475616(+)


>ENSCPOG00000015569
ATGGCGGTAGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
AAAAGACTGGTATGATGTGAAGGCACCGGCTATGTTCAACATAAGAAATATTGGAAAAACACTAGTCACTAGAACTCAAG
GAACCAAAATTGCGTCTGATGGGCTCAAAGGTCGTGTGTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTTGCC
TTTAGGAAATTCAAGCTAATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTCACCCG
TGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACCATGATCGAAGCTCATGTTGATGTCAAGACTACCGATGGTTATT
TGCTTCGTTTGTTCTGTGTTGGCTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAA
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA
ACTGATTCCAGACAGCATTGGGAAAGACATAGAAAAGGCTTGCCAGTCTATTTATCCTCTTCATGATGTCTTTGTCAGAA
AAGTAAAAATGCTGAAGAAGCCTAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGTAGTAGCTCTGGAAAA
GCTACTGGAGATGAGACTGGAGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAGTCTGTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 98 .41 RPM
SRP017611_kidney 192 .73 RPM
SRP017611_liver 127 .66 RPM
SRP040447_lung 307 .85 RPM
SRP040447_skeletal_muscle 268 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000002250 possible_ortholog 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Equus caballus ENSECAG00000009573 ortholog_one2one 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Erinaceus europaeus ENSEEUG00000004994 possible_ortholog 4 retrogenes
retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Felis catus ENSFCAG00000031288 ortholog_one2one 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Loxodonta africana ENSLAFG00000017660 possible_ortholog 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2many 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 ortholog_one2one 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Procavia capensis ENSPCAG00000015040 ortholog_one2one 6 retrogenes
retro_pcap_211, retro_pcap_286, retro_pcap_355, retro_pcap_420, retro_pcap_456, retro_pcap_57,
Pongo abelii ENSPPYG00000025869 ortholog_one2one 27 retrogenes
retro_pabe_1339, retro_pabe_1572, retro_pabe_1636, retro_pabe_1895, retro_pabe_1899, retro_pabe_2117, retro_pabe_2570, retro_pabe_2578, retro_pabe_2661, retro_pabe_2769, retro_pabe_2779, retro_pabe_2826, retro_pabe_2942, retro_pabe_3014, retro_pabe_3076, retro_pabe_3186, retro_pabe_3214, retro_pabe_3560, retro_pabe_369, retro_pabe_3692, retro_pabe_394, retro_pabe_473, retro_pabe_550, retro_pabe_602, retro_pabe_789, retro_pabe_912, retro_pabe_985,
Pteropus vampyrus ENSPVAG00000015406 ortholog_one2one 24 retrogenes
retro_pvam_1053, retro_pvam_1056, retro_pvam_1058, retro_pvam_1138, retro_pvam_1180, retro_pvam_1203, retro_pvam_1476, retro_pvam_149, retro_pvam_311, retro_pvam_330, retro_pvam_354, retro_pvam_36, retro_pvam_368, retro_pvam_376, retro_pvam_462, retro_pvam_486, retro_pvam_582, retro_pvam_73, retro_pvam_754, retro_pvam_799, retro_pvam_86, retro_pvam_893, retro_pvam_917, retro_pvam_996,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_many2many 2 retrogenes
retro_shar_777, retro_shar_95,
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_one2one 1 retrogene
retro_itri_58,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_210 78.06 73.86
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2. retro_cpor_383 93.56 100.00
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3. retro_cpor_460 98.86 100.00
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4. retro_cpor_555 73.33 50.76
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5. retro_cpor_609 73.53 63.64
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6. retro_cpor_646 69.28 56.06
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7. retro_cpor_789 69.70 97.35
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8. retro_cpor_1154 74.19 70.08
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9. retro_cpor_1229 60.27 81.06
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Download FASTA sequences of all ENSCPOG00000015569 retrocopies