Parental gene:

RPS3A, ENSEEUG00000004994

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_282536:4544..8612(-)


>ENSEEUG00000004994
ATGGCGGTCGGCAAAAACAAGCGCCTTACGAAAGGTGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCGAA
GAAGGACTGGTACGATGTGAAAGCGCCAGCAATGTTCAACATAAGGAATATTGGGAAGACACTAGTCACAAGAACTCAAG
GAACCAAGATCGCATCTGATGGCCTGAAGGGTCGTGTGTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTCGCA
TTTAGAAAATTCAAGCTCATTACTGAGGATGATCAAGGCAAAAACTGCCTGACTAACTTCCATGGCATGGACCTCACCCG
CGATAAAATGTGCTCCATGGTCAAAAAGCAGTGGACCATGATTGAAGCTCATGTTGATGTAAAGACTACCGATGGCTATT
TGCTTCGTCTATTCTGTGTGGGGTTTACTAAAAAACGCAACAACCAGATTCGAAAAACCTCTTATGCTCAACACCAACAA
GTTCGACAGATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTAAAAGAGGTGGTCAATAA
GTTGATTCCCGATAGCATTGGGAAAGACATAGAAAAAGCTTGCCAGTCTATTTACCCACTTCATGATGTCTTTGTTAGAA
AAGTGAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGAGAAGGTGGTAGTTCTGGGAAA
ACTACTGGAGATGAGACTGGTGCTAAAGTTGAGCGGGCCGATGGATATGAACCACCAGTCCAAGAATCTGTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 171 .46 RPM
SRP017611_kidney 311 .88 RPM
SRP017611_liver 246 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009908 possible_ortholog 3 retrogenes
retro_btau_1284, retro_btau_1733, retro_btau_233,
Canis familiaris ENSCAFG00000007990 possible_ortholog 7 retrogenes
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Callithrix jacchus ENSCJAG00000002268 possible_ortholog 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Cavia porcellus ENSCPOG00000015569 possible_ortholog 9 retrogenes
retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Dipodomys ordii ENSDORG00000002250 ortholog_one2one 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Equus caballus ENSECAG00000009573 possible_ortholog 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Felis catus ENSFCAG00000031288 possible_ortholog 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Gorilla gorilla ENSGGOG00000003182 possible_ortholog 2 retrogenes
retro_ggor_70, retro_ggor_97,
Loxodonta africana ENSLAFG00000017660 possible_ortholog 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Myotis lucifugus ENSMLUG00000014788 possible_ortholog 8 retrogenes
retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 possible_ortholog 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 ortholog_one2many 2 retrogenes
retro_mmus_218, retro_mmus_254,
Oryctolagus cuniculus ENSOCUG00000007011 possible_ortholog 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 ortholog_one2many 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Sus scrofa ENSSSCG00000009019 possible_ortholog 3 retrogenes
retro_sscr_27, retro_sscr_749, retro_sscr_762,
Ictidomys tridecemlineatus ENSSTOG00000024203 possible_ortholog 1 retrogene
retro_itri_58,
Tupaia belangeri ENSTBEG00000002963 possible_ortholog 98 retrogenes
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_66 90.00 60.61
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2. retro_eeur_297 92.09 95.83
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3. retro_eeur_510 92.09 95.83
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4. retro_eeur_517 92.72 78.03
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Download FASTA sequences of all ENSEEUG00000004994 retrocopies