Parental gene:

CHP1, ENSCPOG00000010577

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:26873600..26913775(+)


>ENSCPOG00000010577
ATGGGGTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACAGGCTTTTCTCACAGTCA
GATCACTCGCCTCTACAGCCGATTCACCAGCCTGGACAAAGGAGAAAATGGAACTCTCAGCCGGGAAGACTTCCAGAGAA
TTCCAGAGCTTGCCATCAACCCACTGGGGGACCGGATCATTAATGCCTTCTTTCCAGAGGGAGAGGACCAGGTAAATTTC
CGTGGATTCATGAGAACTTTGGCTCATTTCCGACCCATTGAGGATAATGAAAAGAGCAAAGATGTGAACGGACCAGAACC
ACTCAACAGCAGAAGCAACAAACTACACTTTGCCTTCCGGCTGTATGATTTGGATAAAGATGACAAGATCTCCCGTGACG
AACTGTTACAGGTGCTACGCATGATGGTTGGCGTGAATATCTCAGATGAGCAGCTAGGCAGCATTGCAGACAGGACCATC
CAGGAGGCTGACCAGGATGGGGACAGTGCCATATCCTTCACAGAGTTTGTTAAGGTTTTGGAGAAGGTGGATGTAGAACA
GAAAATGAGCATCCGGTTTCTTCACTAA

Library Parental gene expression (RPM)
SRP017611_brain 47 .57 RPM
SRP017611_kidney 54 .12 RPM
SRP017611_liver 66 .16 RPM
SRP040447_lung 23 .91 RPM
SRP040447_skeletal_muscle 14 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000009525 ortholog_one2one 1 retrogene
retro_cfam_2136,
Homo sapiens ENSG00000187446 ortholog_one2one 2 retrogenes
retro_hsap_3334, retro_hsap_3541,
Gorilla gorilla ENSGGOG00000007312 ortholog_one2one 2 retrogenes
retro_ggor_1293, retro_ggor_2392,
Macaca mulatta ENSMMUG00000017092 ortholog_one2one 2 retrogenes
retro_mmul_1809, retro_mmul_2088,
Mus musculus ENSMUSG00000014077 ortholog_one2one 4 retrogenes
retro_mmus_1458, retro_mmus_2094, retro_mmus_3133, retro_mmus_3469,
Nomascus leucogenys ENSNLEG00000003465 ortholog_one2one 4 retrogenes
retro_nleu_1678, retro_nleu_2269, retro_nleu_2608, retro_nleu_2609,
Procavia capensis ENSPCAG00000005419 ortholog_one2one 1 retrogene
retro_pcap_240,
Pongo abelii ENSPPYG00000006370 ortholog_one2one 2 retrogenes
retro_pabe_2749, retro_pabe_2925,
Pan troglodytes ENSPTRG00000006942 ortholog_one2one 2 retrogenes
retro_ptro_2144, retro_ptro_2407,
Rattus norvegicus ENSRNOG00000004742 ortholog_one2one 2 retrogenes
retro_rnor_2034, retro_rnor_2223,
Ictidomys tridecemlineatus ENSSTOG00000014503 ortholog_one2one 1 retrogene
retro_itri_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_726 65.05 51.79
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2. retro_cpor_1224 61.07 75.90
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Download FASTA sequences of all ENSCPOG00000010577 retrocopies