Parental gene:

ENSCPOG00000009477

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_23:18280251..18301007(+)


>ENSCPOG00000009477
ATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCGCAAGAAGCTGCTGGAGCACAAGGAGATCGACGGCCGTCTGAA
GGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGTATGAAAAGTCTGAAAATGATCTGAAGGCCCTGCAAAGTGTTG
GGCAGATTGTGGGTGAAGTGCTTAAACAATTAACTGAAGAAAAATTCATTGTTAAAGCTACGAATGGACCAAGATATGTT
GTGGGTTGTCGTCGACAGCTTGACAAAAGCAAGCTGAAGCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTAT
CATGAGATACTTGCCGAGAGAGGTGGATCCATTGGTTTACAACATGTCTCATGAGGACCCTGGGAATGTTTCTTACTCAG
AGATTGGAGGGCTGTCAGAACAGATTCGAGAACTGAGAGAGGTAATAGAATTACCACTCACAAACCCAGAATTATTCCAG
CGTGTGGGAATAATACCTCCAAAAGGCTGTTTGTTATATGGACCACCAGGCACAGGAAAAACACTCTTGGCACGAGCTGT
TGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTATCTAGTTCTATTGTAGATAAGTACATTGGTGAAAGTGCCCGTT
TGATTAGAGAAATGTTTAATTATGCAAGGGACCATCAGCCATGCATCATTTTTATGGATGAAATCGATGCTATTGGTGGT
CGCCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGATCCAGAGAACTTTAATGGAGTTACTGAATCAGATGGATGGATT
TGATACTCTGCATAGAGTTAAAATGATCATGGCTACAAACAGACCAGATACACTGGATCCTGCGTTGCTGCGTCCAGGAA
GATTAGATAGAAAAATACATATTGATTTACCAAATGAACAAGCAAGATTAGATATATTGAAAATCCATGCAGGCCCCATT
ACAAAGCATGGCGAAATAGAAACAGATTATGAAGCAATTGTGAAACTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAA
TGTTTGTACTGAAGCAGGTATGTTTGCAATTCGTGCTGATCATGATTTTGTAGTTCAGGAAGACTTCATGAAAGCAGTTA
GAAAAGTGGCTGATTCTAAGAAGCTAGAGTCGAAATTGGACTATAAACCTGTGTAA

Library Parental gene expression (RPM)
SRP017611_brain 13 .34 RPM
SRP017611_kidney 15 .91 RPM
SRP017611_liver 19 .94 RPM
SRP040447_lung 27 .21 RPM
SRP040447_skeletal_muscle 35 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007126 ortholog_many2many 2 retrogenes
retro_cjac_204, retro_cjac_3221,
Homo sapiens ENSG00000100519 ortholog_one2many 2 retrogenes
retro_hsap_1022, retro_hsap_4059,
Gorilla gorilla ENSGGOG00000002152 ortholog_one2many 2 retrogenes
retro_ggor_2727, retro_ggor_808,
Macropus eugenii ENSMEUG00000007084 ortholog_one2many 3 retrogenes
retro_meug_1700, retro_meug_2090, retro_meug_923,
Monodelphis domestica ENSMODG00000014500 ortholog_one2many 1 retrogene
retro_mdom_438,
Nomascus leucogenys ENSNLEG00000012518 ortholog_one2many 2 retrogenes
retro_nleu_559, retro_nleu_900,
Otolemur garnettii ENSOGAG00000010011 ortholog_one2many 1 retrogene
retro_ogar_3101,
Pongo abelii ENSPPYG00000005820 ortholog_one2many 2 retrogenes
retro_pabe_3334, retro_pabe_858,
Pan troglodytes ENSPTRG00000006352 ortholog_one2many 2 retrogenes
retro_ptro_2752, retro_ptro_699,
Rattus norvegicus ENSRNOG00000007203 ortholog_one2many 1 retrogene
retro_rnor_1480,
Tursiops truncatus ENSTTRG00000003880 ortholog_one2many 1 retrogene
retro_ttru_117,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_47 99.49 100.00
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Download FASTA sequences of all ENSCPOG00000009477 retrocopies