Parental gene:

TPT1, ENSCPOG00000009278

Aliases:None
Description:translationally-controlled tumor protein [Source:RefSeq peptide;Acc:NP_001166553]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:55557048..55561055(-)


>ENSCPOG00000009278
ATGATTATCTATCGGGACCTCATCAGCCACGATGAGATGTCCGACATTTACAAGATCCGGGAGATCGCGGACGGGCTGTG
CGAGGTGGAGGGCAAGATGGTCAGTAGAACAGAGGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAG
GCCCCGAGGGCGAAGGCACAGAAAGCACAGTAATCACTGGTGTTGATATTGTCATGAACCATCACTTGCAGGAAACCAGT
TTCACAAAAGAGGCCTACAAGAAGTACATCAAAGATTATATGAAATCAATCAAAGGTAAACTTGAAGAACAAAGACCAGA
AAGAGTAAAACCGTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTATCAGTTCTTTA
TTGGTGCAAACATGAATCCAGATGGCATGGTTGCTCTCCTGGACTACCGTGAGGATGGTGTGACCCCATTTATGATTTTC
TTCAAGGATGGCTTAGAAATGGAAAAATGTTAA

Library Parental gene expression (RPM)
SRP017611_brain 377 .83 RPM
SRP017611_kidney 916 .22 RPM
SRP017611_liver 886 .12 RPM
SRP040447_lung 996 .93 RPM
SRP040447_skeletal_muscle 2302 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2many 2 retrogenes
retro_acar_156, retro_acar_58,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2many 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Dipodomys ordii ENSDORG00000008518 possible_ortholog 2 retrogenes
retro_dord_370, retro_dord_471,
Echinops telfairi ENSETEG00000003091 ortholog_many2many 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2many 2 retrogenes
retro_lcha_24, retro_lcha_34,
Myotis lucifugus ENSMLUG00000017709 ortholog_one2many 1 retrogene
retro_mluc_1332,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mus musculus ENSMUSG00000060126 possible_ortholog 8 retrogenes
retro_mmus_1643, retro_mmus_2193, retro_mmus_2354, retro_mmus_2862, retro_mmus_3264, retro_mmus_3371, retro_mmus_3483, retro_mmus_3496,
Oryctolagus cuniculus ENSOCUG00000023692 possible_ortholog 2 retrogenes
retro_ocun_40, retro_ocun_75,
Procavia capensis ENSPCAG00000016228 possible_ortholog 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Pteropus vampyrus ENSPVAG00000003191 ortholog_one2many 15 retrogenes
retro_pvam_1069, retro_pvam_1116, retro_pvam_1142, retro_pvam_1145, retro_pvam_1252, retro_pvam_1266, retro_pvam_1290, retro_pvam_1322, retro_pvam_1387, retro_pvam_242, retro_pvam_369, retro_pvam_547, retro_pvam_585, retro_pvam_721, retro_pvam_801,
Rattus norvegicus ENSRNOG00000001049 possible_ortholog 7 retrogenes
retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_206 71.25 91.18
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2. retro_cpor_248 61.59 86.47
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3. retro_cpor_340 54.05 64.12
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4. retro_cpor_536 67.84 97.65
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5. retro_cpor_583 70.83 84.12
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6. retro_cpor_602 69.23 90.00
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7. retro_cpor_697 78.48 91.18
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8. retro_cpor_917 78.89 52.35
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9. retro_cpor_968 83.82 80.00
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10. retro_cpor_1053 58.27 80.59
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11. retro_cpor_1215 66.27 95.88
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12. retro_cpor_1273 69.93 87.65
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Download FASTA sequences of all ENSCPOG00000009278 retrocopies