RetrogeneDB - Parental gene ENSDNOG00000000653 details

                            
>ENSDNOG00000000653
ATGATCATCTACCGGGACCTCATCAGCCATGATGAGATGTTCTCCGACATTTACAAGATTCGGGAGATCGCGGACGGCCT

GTGCCTGGAGGTGGAAGGGAAGATGGTCAGTAGGACAGAGGGTAGCATTGATGATTCGCTCATTGGTGGAAATGCCTCCG

CTGAAGGCCCCGAGGGCGAAGGTACCGAAAGTACAGTCATCACTGGTGTAGATATTGTCATGAACCATCACCAGGAACCA

TTCACAAAGGAAGCTTACAAGAAGTATATCAAAGATTACATGAAATCAATCAAAGGCAAACTTGAAGAACAGAGACCAGA

AAGAGTAAAATCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTTAACAACTATCAGTTCTTTA

TTGGTGAAAACATGAATCCAGATGGTATGGTTGCTCTCCTGGACTACCGTGAGGATGGTGTGACCCCATATATGATTTTC

TTTAAGGATGGTTTAGAAATGGAGAAATGTGTAAGTATG

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	181 .44 RPM
SRP012922_cerebellum	63 .51 RPM
SRP012922_heart	91 .19 RPM
SRP012922_kidney	265 .86 RPM
SRP012922_liver	112 .23 RPM
SRP012922_lung	210 .30 RPM
SRP012922_quadricep_muscle	308 .78 RPM
SRP012922_spleen	310 .30 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000006531	ortholog_one2one	2 retrogenes	retro_acar_156, retro_acar_58,
Ailuropoda melanoleuca	ENSAMEG00000013022	ortholog_one2many	8 retrogenes	retro_amel_1153, retro_amel_1521, retro_amel_1593, retro_amel_1804, retro_amel_1878, retro_amel_472, retro_amel_569, retro_amel_969,
Bos taurus	ENSBTAG00000010156	ortholog_one2many	2 retrogenes	retro_btau_21, retro_btau_235,
Canis familiaris	ENSCAFG00000004533	ortholog_one2many	10 retrogenes	retro_cfam_1110, retro_cfam_1328, retro_cfam_1476, retro_cfam_1508, retro_cfam_1846, retro_cfam_254, retro_cfam_341, retro_cfam_483, retro_cfam_661, retro_cfam_777,
Callithrix jacchus	ENSCJAG00000019229	ortholog_one2many	2 retrogenes	retro_cjac_1786, retro_cjac_314,
Cavia porcellus	ENSCPOG00000009278	ortholog_one2many	12 retrogenes	retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dipodomys ordii	ENSDORG00000008518	ortholog_one2one	2 retrogenes	retro_dord_370, retro_dord_471,
Equus caballus	ENSECAG00000018348	ortholog_one2many	3 retrogenes	retro_ecab_337, retro_ecab_686, retro_ecab_727,
Echinops telfairi	ENSETEG00000003091	ortholog_one2many	3 retrogenes	retro_etel_1337, retro_etel_1546, retro_etel_248,
Felis catus	ENSFCAG00000002107	ortholog_one2one	8 retrogenes	retro_fcat_1366, retro_fcat_1544, retro_fcat_1996, retro_fcat_443, retro_fcat_553, retro_fcat_645, retro_fcat_735, retro_fcat_992,
Homo sapiens	ENSG00000133112	ortholog_one2one	13 retrogenes	retro_hsap_1083, retro_hsap_2234, retro_hsap_2256, retro_hsap_2382, retro_hsap_2503, retro_hsap_3156, retro_hsap_3676, retro_hsap_3828, retro_hsap_3946, retro_hsap_4307, retro_hsap_4701, retro_hsap_4786, retro_hsap_678,
Gorilla gorilla	ENSGGOG00000001684	ortholog_one2many	12 retrogenes	retro_ggor_1561, retro_ggor_1681, retro_ggor_1807, retro_ggor_2045, retro_ggor_2484, retro_ggor_2628, retro_ggor_2652, retro_ggor_2877, retro_ggor_2878, retro_ggor_2980, retro_ggor_584, retro_ggor_855,
Latimeria chalumnae	ENSLACG00000004306	ortholog_one2one	2 retrogenes	retro_lcha_24, retro_lcha_34,
Loxodonta africana	ENSLAFG00000021740	ortholog_one2many	7 retrogenes	retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Microcebus murinus	ENSMICG00000002027	ortholog_one2one	9 retrogenes	retro_mmur_102, retro_mmur_1060, retro_mmur_1163, retro_mmur_1627, retro_mmur_248, retro_mmur_318, retro_mmur_490, retro_mmur_641, retro_mmur_967,
Myotis lucifugus	ENSMLUG00000017709	ortholog_one2many	1 retrogene	retro_mluc_1332,
Macaca mulatta	ENSMMUG00000022979	ortholog_one2many	2 retrogenes	retro_mmul_158, retro_mmul_85,
Monodelphis domestica	ENSMODG00000014940	possible_ortholog	2 retrogenes	retro_mdom_128, retro_mdom_9,
Mustela putorius furo	ENSMPUG00000001640	ortholog_one2many	10 retrogenes	retro_mputfur_1043, retro_mputfur_30, retro_mputfur_364, retro_mputfur_565, retro_mputfur_574, retro_mputfur_582, retro_mputfur_677, retro_mputfur_870, retro_mputfur_960, retro_mputfur_967,
Mus musculus	ENSMUSG00000060126	ortholog_one2one	8 retrogenes	retro_mmus_1643, retro_mmus_2193, retro_mmus_2354, retro_mmus_2862, retro_mmus_3264, retro_mmus_3371, retro_mmus_3483, retro_mmus_3496,
Nomascus leucogenys	ENSNLEG00000002108	ortholog_one2many	8 retrogenes	retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Oryctolagus cuniculus	ENSOCUG00000023692	ortholog_one2many	2 retrogenes	retro_ocun_40, retro_ocun_75,
Otolemur garnettii	ENSOGAG00000012523	ortholog_one2one	20 retrogenes	retro_ogar_1141, retro_ogar_1249, retro_ogar_1538, retro_ogar_1682, retro_ogar_1754, retro_ogar_2193, retro_ogar_2225, retro_ogar_2298, retro_ogar_2331, retro_ogar_2594, retro_ogar_2668, retro_ogar_2819, retro_ogar_2893, retro_ogar_2944, retro_ogar_344, retro_ogar_350, retro_ogar_3503, retro_ogar_622, retro_ogar_746, retro_ogar_906,
Procavia capensis	ENSPCAG00000016228	ortholog_one2one	3 retrogenes	retro_pcap_245, retro_pcap_351, retro_pcap_357,
Pongo abelii	ENSPPYG00000005335	ortholog_one2many	5 retrogenes	retro_pabe_1958, retro_pabe_2626, retro_pabe_2809, retro_pabe_83, retro_pabe_900,
Pteropus vampyrus	ENSPVAG00000003191	ortholog_one2one	15 retrogenes	retro_pvam_1069, retro_pvam_1116, retro_pvam_1142, retro_pvam_1145, retro_pvam_1252, retro_pvam_1266, retro_pvam_1290, retro_pvam_1322, retro_pvam_1387, retro_pvam_242, retro_pvam_369, retro_pvam_547, retro_pvam_585, retro_pvam_721, retro_pvam_801,
Rattus norvegicus	ENSRNOG00000001049	ortholog_one2many	7 retrogenes	retro_rnor_115, retro_rnor_2464, retro_rnor_2706, retro_rnor_411, retro_rnor_886, retro_rnor_908, retro_rnor_958,
Sorex araneus	ENSSARG00000009319	ortholog_one2one	1 retrogene	retro_sara_113,
Sarcophilus harrisii	ENSSHAG00000001545	possible_ortholog	1 retrogene	retro_shar_227,
Ictidomys tridecemlineatus	ENSSTOG00000006931	ortholog_one2many	7 retrogenes	retro_itri_1192, retro_itri_146, retro_itri_266, retro_itri_325, retro_itri_612, retro_itri_700, retro_itri_999,
Tupaia belangeri	ENSTBEG00000013539	ortholog_one2many	25 retrogenes	retro_tbel_1009, retro_tbel_1556, retro_tbel_1634, retro_tbel_1724, retro_tbel_1725, retro_tbel_2086, retro_tbel_2100, retro_tbel_2265, retro_tbel_2278, retro_tbel_2464, retro_tbel_2550, retro_tbel_2767, retro_tbel_3238, retro_tbel_3354, retro_tbel_3403, retro_tbel_3410, retro_tbel_3592, retro_tbel_3888, retro_tbel_4226, retro_tbel_4400, retro_tbel_4526, retro_tbel_459, retro_tbel_4641, retro_tbel_4733, retro_tbel_830,
Tarsius syrichta	ENSTSYG00000003160	ortholog_one2one	13 retrogenes	retro_tsyr_1054, retro_tsyr_1291, retro_tsyr_1549, retro_tsyr_1601, retro_tsyr_2120, retro_tsyr_314, retro_tsyr_655, retro_tsyr_763, retro_tsyr_781, retro_tsyr_784, retro_tsyr_890, retro_tsyr_958, retro_tsyr_990,
Vicugna pacos	ENSVPAG00000008472	ortholog_one2many	5 retrogenes	retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_71	62.18	67.05	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_237	62.58	86.13	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_276	89.78	78.03	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_342	68.13	50.29	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_397	50.30	94.80	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_417	58.72	58.96	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_453	60.26	87.86	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_dnov_847	84.67	85.55	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_dnov_870	96.51	98.27	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_dnov_909	70.87	71.68	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_dnov_934	79.53	97.11	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_dnov_981	58.38	98.27	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_dnov_1071	69.29	78.61	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_dnov_1202	97.09	98.27	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_dnov_1349	82.56	98.27	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_dnov_1705	83.33	91.91	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_dnov_2082	68.57	98.27	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_dnov_2283	83.82	97.11	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_dnov_2305	72.30	82.66	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_dnov_2412	100.00	52.02	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_dnov_2531	84.03	67.63	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_dnov_2687	97.09	98.27	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000000653 retrocopies

Parental gene:	TPT1, ENSDNOG00000000653
Aliases:	None
Description:	tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	scaffold_36649:11758..13910(+)

Parental gene:

TPT1, ENSDNOG00000000653