Parental gene:

SF3A3, ENSCPOG00000008660

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_143:222533..242673(-)


>ENSCPOG00000008660
ATGGAGACAATTCTAGAGCAGCAGCGGCGGTACCATGAGGAGAAGGAACGGCTCATGGACGTAATGGCCAAAGAGATGCT
CACTAAGAAGTCTACGCTCCGGGACCAGATCAATTCCGATCACCGCACTCGGGCCATGCAAGATCGGTACATGGAGGTCA
GTGGGAACCTGAGAGATTTGTATGATGATAAGGATGGGTTACGAAAGGAGGAGCTCAATGCCATTTCAGGACCAAATGAA
TTTGCTGAATTCTATAATAGACTAAAGCAAATAAAGGAATTCCACCGAAAGCACCCAAATGAGATTTGTGTGCCAATGTC
AGTCGAATTTGAGGAGCTCCTGAAAGCTCGAGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTCACAGATGAAG
AGGGATATGGCCGTTACCTCGATCTCCATGACTGTTACCTCAAGTACATTAACCTGAAGGCGTCTGAGAAGCTGGATTAC
ATCACATACCTGTCAATCTTTGACCAGTTATTTGACATTCCTAAAGAAAGGAAGAATGCAGAGTATAAGAGGTACCTTGA
AATGCTTCTTGAGTATCTTCAGGATTACACAGACAGAGTGAAGCCCCTTCAAGATCAGAATGAACTTTTTGGGAAGATAC
AGAATGAATTTGAGAAAAAATGGGAGAACGGTACCTTTCCTGGATGGCCGAAAGAGACAAGCAGTGCCCTGACCCATGCT
GGCGCCCATCTTGATCTGTCTGCGTTTTCCTCCTGGGAGGAGTTGGCCTCTCTGGGTCTAGACAGATTGAAGTCTGCACT
CTTAGCTTTAGGCCTGAAATGCGGTGGCACCCTTGAAGAGCGAGCCCAGAGGCTGTTCAGCACCAAAGGGAAGTCTTTGG
AATCTCTTGACACCTCCCTGTTTGCCAAAAATCCCAAATCCAAGGGCACTAAGAGAGACACTGAGAGGAACAAAGACATT
GCTTTCCTAGAAGCCCAGATCTATGAATATGTCGAGATTCTTGGGGAACAGCGACAGCTCACTCATGAAAATGTACAACG
CAAGCAAGCTAGGACCGGAGAAGAGCGAGAAGAGGAGGAGGAAGAGCAGATCAGTGAGAGTGAAAGCGAAGATGAAGAGA
ATGAGATCATTTACAACCCCAAAAACCTGCCCCTGGGCTGGGATGGCAAACCCATCCCCTACTGGCTGTATAAGCTACAT
GGCCTAAATATCAACTACAATTGTGAGATTTGTGGAAACTACACCTACCGAGGGCCTAAGGCCTTCCAGCGGCACTTCGC
TGAATGGCGTCACGCTCATGGCATGAGGTGTTTGGGCATTCCAAACACTGCACACTTTGCTAATGTGACACAGATTGAAG
ATGCTGTCTCCTTGTGGGCCAAGCTGAAACTGCAGAAGGCTTCAGAACGATGGCAGCCTGACACTGAGGAAGAGTATGAA
GACTCCAGTGGGAATGTTGTAAATAAGAAAACATATGAGGATCTGAAAAGACAAGGACTGCTGTAG

Library Parental gene expression (RPM)
SRP017611_brain 32 .04 RPM
SRP017611_kidney 43 .55 RPM
SRP017611_liver 32 .17 RPM
SRP040447_lung 43 .99 RPM
SRP040447_skeletal_muscle 17 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001262 ortholog_one2one 1 retrogene
retro_amel_485,
Canis familiaris ENSCAFG00000003222 ortholog_one2many 1 retrogene
retro_cfam_176,
Callithrix jacchus ENSCJAG00000002176 ortholog_one2one 1 retrogene
retro_cjac_4109,
Homo sapiens ENSG00000183431 ortholog_one2one 2 retrogenes
retro_hsap_2441, retro_hsap_937,
Macropus eugenii ENSMEUG00000002534 ortholog_one2one 3 retrogenes
retro_meug_1135, retro_meug_1346, retro_meug_642,
Macaca mulatta ENSMMUG00000023199 ortholog_one2one 1 retrogene
retro_mmul_631,
Monodelphis domestica ENSMODG00000017729 ortholog_one2many 1 retrogene
retro_mdom_269,
Nomascus leucogenys ENSNLEG00000011720 ortholog_one2one 1 retrogene
retro_nleu_2775,
Pan troglodytes ENSPTRG00000000559 ortholog_one2one 2 retrogenes
retro_ptro_1411, retro_ptro_649,
Sorex araneus ENSSARG00000014204 ortholog_one2one 1 retrogene
retro_sara_407,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_658 75.08 59.48
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Download FASTA sequences of all ENSCPOG00000008660 retrocopies