RetrogeneDB - Parental gene ENSCPOG00000004543 details

                            
>ENSCPOG00000004543
ATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGATATCACTCTGAAGGGACGCACAGTTATTGT

GAAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAACCACATCAATGTAGAGCTCAGTCTTCTTGGGAAGAAAAAGAAGA

GGCTCCGGGTTGACAAATGGTGGGGGAACAGAAAAGAACTGGCTACCGTTCGCACCATCTGTAGTCACGTACAGAATATG

ATCAAGGGTGTTACGCTGGGCTTCCGTTACAAGATGAGGTCTGTGTACGCTCACTTCCCCATCAACGTCGTTATTCAGGA

GAATGGGTCTCTTGTTGAAATCCGGAATTTCTTGGGTGAAAAATACATTCGCCGGGTTCGTATGAGGGCAGTAGGTGTCG

CTTGCTCAGTATCACAAGCCCAGAAGGATGAACTAATCCTTGAAGGAAATGACATTGAACTTGTTTCAAATTCAGTAGCT

GCTTTGATTCAGCAAGCCACAACAGTCAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTTTCTGAAAAGGG

AACAGTTCAGCAGCCAGATGAATAA

Library	Parental gene expression (RPM)
SRP017611_brain	84 .20 RPM
SRP017611_kidney	197 .34 RPM
SRP017611_liver	143 .12 RPM
SRP040447_lung	176 .34 RPM
SRP040447_skeletal_muscle	206 .16 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000007317	ortholog_one2many	1 retrogene	retro_acar_163,
Danio rerio	ENSDARG00000037350	ortholog_one2many	1 retrogene	retro_drer_18,
Dasypus novemcinctus	ENSDNOG00000007411	possible_ortholog	18 retrogenes	retro_dnov_1298, retro_dnov_1560, retro_dnov_1684, retro_dnov_1845, retro_dnov_1877, retro_dnov_1936, retro_dnov_2148, retro_dnov_2277, retro_dnov_2624, retro_dnov_2659, retro_dnov_282, retro_dnov_407, retro_dnov_437, retro_dnov_450, retro_dnov_615, retro_dnov_787, retro_dnov_82, retro_dnov_975,
Dipodomys ordii	ENSDORG00000001088	ortholog_one2one	6 retrogenes	retro_dord_276, retro_dord_42, retro_dord_435, retro_dord_604, retro_dord_637, retro_dord_718,
Erinaceus europaeus	ENSEEUG00000004394	possible_ortholog	39 retrogenes	retro_eeur_11, retro_eeur_136, retro_eeur_153, retro_eeur_162, retro_eeur_184, retro_eeur_191, retro_eeur_229, retro_eeur_246, retro_eeur_27, retro_eeur_279, retro_eeur_280, retro_eeur_282, retro_eeur_296, retro_eeur_307, retro_eeur_352, retro_eeur_383, retro_eeur_399, retro_eeur_410, retro_eeur_429, retro_eeur_433, retro_eeur_449, retro_eeur_453, retro_eeur_461, retro_eeur_471, retro_eeur_486, retro_eeur_493, retro_eeur_51, retro_eeur_540, retro_eeur_572, retro_eeur_590, retro_eeur_599, retro_eeur_600, retro_eeur_619, retro_eeur_624, retro_eeur_65, retro_eeur_670, retro_eeur_678, retro_eeur_68, retro_eeur_98,
Gadus morhua	ENSGMOG00000001002	ortholog_one2many	1 retrogene	retro_gmor_28,
Macropus eugenii	ENSMEUG00000016722	ortholog_many2many	8 retrogenes	retro_meug_1087, retro_meug_1411, retro_meug_1961, retro_meug_22, retro_meug_440, retro_meug_490, retro_meug_650, retro_meug_763,
Myotis lucifugus	ENSMLUG00000004597	possible_ortholog	34 retrogenes	retro_mluc_1028, retro_mluc_1029, retro_mluc_1261, retro_mluc_1269, retro_mluc_127, retro_mluc_1320, retro_mluc_1368, retro_mluc_1380, retro_mluc_1572, retro_mluc_1655, retro_mluc_1704, retro_mluc_1757, retro_mluc_1813, retro_mluc_1858, retro_mluc_1880, retro_mluc_1983, retro_mluc_2041, retro_mluc_2067, retro_mluc_2112, retro_mluc_2119, retro_mluc_220, retro_mluc_2229, retro_mluc_223, retro_mluc_2230, retro_mluc_2370, retro_mluc_2428, retro_mluc_2495, retro_mluc_2611, retro_mluc_293, retro_mluc_461, retro_mluc_533, retro_mluc_648, retro_mluc_75, retro_mluc_895,
Monodelphis domestica	ENSMODG00000020553	ortholog_one2many	7 retrogenes	retro_mdom_1026, retro_mdom_1078, retro_mdom_1261, retro_mdom_1352, retro_mdom_1414, retro_mdom_401, retro_mdom_637,
Mus musculus	ENSMUSG00000047215	ortholog_one2many	2 retrogenes	retro_mmus_262, retro_mmus_81,
Otolemur garnettii	ENSOGAG00000004935	possible_ortholog	20 retrogenes	retro_ogar_117, retro_ogar_1223, retro_ogar_1471, retro_ogar_1614, retro_ogar_1694, retro_ogar_1807, retro_ogar_1884, retro_ogar_1906, retro_ogar_1933, retro_ogar_2162, retro_ogar_2173, retro_ogar_2806, retro_ogar_3036, retro_ogar_3115, retro_ogar_3276, retro_ogar_329, retro_ogar_429, retro_ogar_864, retro_ogar_886, retro_ogar_963,
Pteropus vampyrus	ENSPVAG00000000919	possible_ortholog	49 retrogenes	retro_pvam_1025, retro_pvam_111, retro_pvam_1126, retro_pvam_1153, retro_pvam_1181, retro_pvam_1195, retro_pvam_1199, retro_pvam_1215, retro_pvam_1227, retro_pvam_1258, retro_pvam_1273, retro_pvam_1286, retro_pvam_1310, retro_pvam_1373, retro_pvam_1398, retro_pvam_1421, retro_pvam_1470, retro_pvam_175, retro_pvam_178, retro_pvam_185, retro_pvam_273, retro_pvam_304, retro_pvam_324, retro_pvam_325, retro_pvam_341, retro_pvam_37, retro_pvam_372, retro_pvam_42, retro_pvam_437, retro_pvam_457, retro_pvam_46, retro_pvam_461, retro_pvam_472, retro_pvam_482, retro_pvam_516, retro_pvam_586, retro_pvam_621, retro_pvam_622, retro_pvam_702, retro_pvam_744, retro_pvam_850, retro_pvam_900, retro_pvam_920, retro_pvam_949, retro_pvam_957, retro_pvam_961, retro_pvam_982, retro_pvam_986, retro_pvam_998,
Rattus norvegicus	ENSRNOG00000026716	ortholog_one2many	3 retrogenes	retro_rnor_237, retro_rnor_310, retro_rnor_332,
Sarcophilus harrisii	ENSSHAG00000004918	ortholog_one2many	8 retrogenes	retro_shar_191, retro_shar_192, retro_shar_236, retro_shar_340, retro_shar_359, retro_shar_406, retro_shar_600, retro_shar_607,
Ictidomys tridecemlineatus	ENSSTOG00000002077	ortholog_one2one	13 retrogenes	retro_itri_1106, retro_itri_1182, retro_itri_1328, retro_itri_305, retro_itri_313, retro_itri_339, retro_itri_392, retro_itri_588, retro_itri_663, retro_itri_838, retro_itri_908, retro_itri_914, retro_itri_956,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_182	73.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_346	52.63	58.25	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_354	71.30	55.67	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_395	66.10	59.79	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_472	56.78	59.28	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cpor_530	69.23	72.16	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cpor_565	65.04	61.86	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cpor_628	62.75	52.58	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cpor_665	56.80	63.92	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cpor_684	67.91	67.53	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cpor_1037	75.69	73.20	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cpor_1160	66.35	52.06	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cpor_1264	54.69	63.92	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cpor_1400	64.71	52.06	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cpor_1483	80.20	99.48	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000004543 retrocopies

Parental gene:	ENSCPOG00000004543
Aliases:	None
Description:	None
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_24:13812157..13816250(-)

Parental gene:

ENSCPOG00000004543