Parental gene:

ENSCPOG00000003074

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_28:2311346..2329400(+)


>ENSCPOG00000003074
ACTCAGGTGACCCCGTCTCTGGTCTTTGCCATCTCTATCGCTGCAATTGGCTCTTTCCAGTTTGGCTACAACACTGGAGT
CATCAATGCTCCCGAGATGATCATTACAGAATTTATCAACAGCACCTTGTCCCAGAAGTTGCATAACCCTCCCAGCAAGG
AGCTGCTCACGACTCTCTGGTCCTTGTCTGTGGCTATATTCTCAGTGGGCGGAATGCTTGGCTCCTTTTCCGTTGGACTC
TTTGTCAACCGCTTTGGCAGGCGCAACTCCATGCTCATGGTCAACGTGCTGGTGGTGGTCAGCAGCTGCCTCATGGGCTT
CTGCAAGATGGCCAAGTCCGTGGAGATGCTGATCCTTGGCCGCTTGATCACGGGCATCTTCTGCGGGCTCTGCACGGGGT
TCGTGCCCATGTACATCGGAGAGGTGTCTCCCATCAGCCTGCGGGGCGCCTTTGGCACCCTCCACCAGCTGGGCATCGTC
ATCGGGATCCTGGTGGCTCAGGTCTTTGGCCTGAAGTTCATCTTGGGGACTGAGGAGCGCTGGCCTGTGCTGCTGGGCGG
CACCATCCTCCCAGCCTTCTTGCAAAGTGTAGCGCTTCCTTTCTGCCCTGAAAGTCCTAGATTTTTGCTCATTAACAGAA
ATGAGGAGGAGCGCGCTACAAAGATTCTCCAGCGACTGTGGGGCACCCAGGACGTGTCCCAGGACATCCAGGAGATGAAG
GACGAGAGTGTGCAGATGAACCAGGAGCCTACAGTCACCGTGCTGGAGCTCTTTAGATCCCGCAAATATCAGCAGCCCAT
CCTGATCGCCATCATGCTGCAGCTCTCCCAGCAGCTCTCGGGGATCAATGCTGTGTTCTATTATTCAACTGGAATCTTCA
AGGATGCAGGCGTCCAGGAGCCCATCTACGCCACCATTGGAGCGGGCGTGGTTAACACCATCTTCACTGTGTTTTCTGTG
TTTCTGGTGGAAAGTGTGGGAAGAAGGAGCCTGCACATGACCGGCCTCGGCGGCATGGCTGTTTGTTCCATCATCATGAC
AGTCTCTCTGTTGCTGAAGAGCACATACAATTTTATGAGCTACATCTGCATCGCGGCTATCTTGATCTATGTGGCCTTCT
TTGAGATCGGACCCGGCCCCATCCCCTGGTTCATCGTGGCCGAGCTCTTCAGCCAGGGACCCCGCCCAGCCGCCATGGCT
GTGGCTGGTTGTTCTAACTGGACCTCCAACTTTTTGGTTGGACTGCTCTTCCCCTTGGCTGCAGCCTCTTTAGGTGCGTA
TGTTTTTCTCATCTTCGCTGTCTTCTTAATTATCTTTCTGCTGTTCACCTTCTTCAAAGTCCCCGAGACCCGAGGCAGGA
CTTTTGAGGAAATCACTCGCACCTTTGAAGGGAACACTCGGGTCTCCGGGGGACCT

Library Parental gene expression (RPM)
SRP017611_brain 0 .12 RPM
SRP017611_kidney 0 .10 RPM
SRP017611_liver 0 .44 RPM
SRP040447_lung 6 .83 RPM
SRP040447_skeletal_muscle 0 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004556 ortholog_one2many 2 retrogenes
retro_btau_708, retro_btau_709,
Callithrix jacchus ENSCJAG00000018988 ortholog_many2many 1 retrogene
retro_cjac_446,
Cavia porcellus ENSCPOG00000009834 within_species_paralog 1 retrogene
retro_cpor_760,
Cavia porcellus ENSCPOG00000011295 within_species_paralog 1 retrogene
retro_cpor_587,
Felis catus ENSFCAG00000001625 ortholog_one2many 1 retrogene
retro_fcat_1924,
Homo sapiens ENSG00000059804 ortholog_many2many 2 retrogenes
retro_hsap_3983, retro_hsap_401,
Gorilla gorilla ENSGGOG00000016813 ortholog_many2many 1 retrogene
retro_ggor_398,
Macaca mulatta ENSMMUG00000000439 ortholog_one2many 2 retrogenes
retro_mmul_2301, retro_mmul_502,
Nomascus leucogenys ENSNLEG00000026903 ortholog_many2many 2 retrogenes
retro_nleu_1572, retro_nleu_1904,
Oryctolagus cuniculus ENSOCUG00000008575 ortholog_many2many 1 retrogene
retro_ocun_352,
Pongo abelii ENSPPYG00000004234 ortholog_many2many 1 retrogene
retro_pabe_3274,
Pongo abelii ENSPPYG00000004235 ortholog_many2many 1 retrogene
retro_pabe_315,
Pan troglodytes ENSPTRG00000004624 ortholog_many2many 1 retrogene
retro_ptro_2703,
Pan troglodytes ENSPTRG00000004626 ortholog_many2many 1 retrogene
retro_ptro_307,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_761 59.15 73.09
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Download FASTA sequences of all ENSCPOG00000003074 retrocopies