Parental gene:

ENSCJAG00000021388

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:49819266..49821733(+)


>ENSCJAG00000021388
ATGGGCCGCGTGATCCGTGGACAGAGGAAGGGTGCCGGGTCTGTGTTCCGCGCGCACGTGAAGCACCGTAAGGGCGCCGC
GCGCCTGCGCGCCGTGGATTTCGCCGAGCGGCACGGCTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCC
GCGGCGCGCCCCTCGCCAAGGTGGTCTTCCGGGATCCGTACCGGTTTAAGAAGCGGACGGAGCTGTTCATTGCCGCCGAG
GGCATTCATACGGGCCAGTTTGTGTACTGTGGCAAGAAGGCCCAGCTCAACATTGGCAATGTGCTCCCCGTGGGCACCAT
GCCTGAGGGTACGATCGTGTGTTGCCTGGAGGAGAAGCCTGGAGACCGCGGCAAGCTGGCCCGGGCATCAGGGAACTATG
CCACCGTTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGTTGCCCTCTGGCTCCAAGAAGGTTATCTCCTCA
GCCAACAGAGCTGTGGTTGGTGTGGTGGCTGGAGGTGGCCGAATTGACAAACCCATCTTGAAGGCTGGCCGGGCCTACCA
CAAATACAAGGCAAAGAGGAACTGCTGGCCACGAGTACGGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGTGGTG
GCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCC
CGTCGGACTGGACGTCTCCGGGGAACCAAGACTGTACAGGAGAAAGAGAACTAG

Library Parental gene expression (RPM)
SRP051959_colon 122 .23 RPM
SRP051959_heart 100 .28 RPM
SRP051959_kidney 110 .71 RPM
SRP051959_liver 130 .35 RPM
SRP051959_lung 129 .60 RPM
SRP051959_lymph_node 246 .09 RPM
SRP051959_skeletal_muscle 140 .83 RPM
SRP051959_spleen 167 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017933 ortholog_many2many 1 retrogene
retro_acar_31,
Ailuropoda melanoleuca ENSAMEG00000005395 possible_ortholog 1 retrogene
retro_amel_241,
Bos taurus ENSBTAG00000026327 possible_ortholog 1 retrogene
retro_btau_96,
Canis familiaris ENSCAFG00000001677 ortholog_one2one 1 retrogene
retro_cfam_1132,
Cavia porcellus ENSCPOG00000003854 ortholog_one2one 2 retrogenes
retro_cpor_1006, retro_cpor_1415,
Dasypus novemcinctus ENSDNOG00000009300 ortholog_one2many 2 retrogenes
retro_dnov_2505, retro_dnov_503,
Echinops telfairi ENSETEG00000007104 possible_ortholog 4 retrogenes
retro_etel_1100, retro_etel_264, retro_etel_296, retro_etel_916,
Felis catus ENSFCAG00000026288 possible_ortholog 1 retrogene
retro_fcat_570,
Homo sapiens ENSG00000161016 possible_ortholog 1 retrogene
retro_hsap_2851,
Macropus eugenii ENSMEUG00000013824 possible_ortholog 9 retrogenes
retro_meug_1116, retro_meug_1354, retro_meug_1757, retro_meug_1817, retro_meug_1881, retro_meug_670, retro_meug_941, retro_meug_960, retro_meug_974,
Macaca mulatta ENSMMUG00000013379 possible_ortholog 2 retrogenes
retro_mmul_1470, retro_mmul_1531,
Monodelphis domestica ENSMODG00000004283 possible_ortholog 3 retrogenes
retro_mdom_1055, retro_mdom_1696, retro_mdom_253,
Mustela putorius furo ENSMPUG00000006022 possible_ortholog 1 retrogene
retro_mputfur_1517,
Nomascus leucogenys ENSNLEG00000010952 ortholog_one2one 2 retrogenes
retro_nleu_1603, retro_nleu_594,
Ornithorhynchus anatinus ENSOANG00000002646 possible_ortholog 1 retrogene
retro_oana_93,
Oryctolagus cuniculus ENSOCUG00000024716 possible_ortholog 1 retrogene
retro_ocun_146,
Rattus norvegicus ENSRNOG00000048523 possible_ortholog 2 retrogenes
retro_rnor_122, retro_rnor_239,
Sarcophilus harrisii ENSSHAG00000013568 possible_ortholog 2 retrogenes
retro_shar_482, retro_shar_558,
Tursiops truncatus ENSTTRG00000013858 possible_ortholog 1 retrogene
retro_ttru_1147,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1109 99.22 100.00
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2. retro_cjac_1169 81.29 53.70
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3. retro_cjac_1579 77.02 61.48
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4. retro_cjac_2047 69.06 54.09
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Download FASTA sequences of all ENSCJAG00000021388 retrocopies