Parental gene: | NANOG, ENSCJAG00000018999 |
| Aliases: | None |
| Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:20166984..20173162(+) |
>ENSCJAG00000018999
ATGAGTATGGATCCAGTTTGTTCACAAAGCCTGCCTTGCTCCGAAGCATCCGACTGTGGAGAATCTTCACCTACGCCTGT
GATTTGTGAGCCTGAAGAAAATTATCCATCCTTGCAAATGTGTTCTGCTGAGATGCCTCACACAGAGACTGTCTCCCCTC
TTCCTTCCTCCATGGATCTGCTTACTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGGAAACGACCCACTGCTGCA
GAGAGTAGCCCTGCAGTGAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATATCTCAGTCTTCAGCAGATGCAAGAACTTTCCAACATCCTGAATC
TTAGCTACAAACAGGTGAAGACCTGGTTCCAAAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCAAGG
AACACCAGTGATGTGACTCAGAAGGCCTCAGCACCCACCTACCCCAGCCTCTACTCTTCCTACCACCAGGGATGCCTGGT
GAACACAGCTGGGAACCTTCCGGTATGGAACAACCAGACCTGGAGCAATTCAACCTGGAGCAACCAGACCCGGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAGTCCTGGAACACTCAGGCCTGGAGCAGTCCCTTC
TATAACTGTGGAGAGGAACCTCTGCAGTCCTGTATGCAGTTTCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAACTGCTGGGGAAAACCATAATGTAATACAGCAGACCACTAGGTATTTGAATACTTCACAAACCATGGATTTATTCC
TAAACTACTCTACGAACATGCCACCTGAAGATGTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 0 .00 RPM |
| SRP051959_heart | 0 .02 RPM |
| SRP051959_kidney | 0 .02 RPM |
| SRP051959_liver | 0 .00 RPM |
| SRP051959_lung | 0 .18 RPM |
| SRP051959_lymph_node | 0 .00 RPM |
| SRP051959_skeletal_muscle | 0 .00 RPM |
| SRP051959_spleen | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017064 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013914 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000972 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000002621 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004648 | ortholog_one2many | 8 retrogenes | |
| Felis catus | ENSFCAG00000001621 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000009949 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000002228 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000029325 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000030580 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017979 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016731 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013783 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000026339 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015460 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006989 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_402 | 68.37 | 63.93 | Please wait, loading  |
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| 2. | retro_cjac_880 | 80.50 | 65.25 | Please wait, loading |
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| 3. | retro_cjac_989 | 52.76 | 51.80 | Please wait, loading |
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| 4. | retro_cjac_1732 | 86.75 | 54.10 | Please wait, loading |
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| 5. | retro_cjac_2234 | 75.20 | 81.64 | Please wait, loading |
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| 6. | retro_cjac_2441 | 62.55 | 78.69 | Please wait, loading |
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| 7. | retro_cjac_4153 | 79.19 | 63.93 | Please wait, loading |
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| 8. | retro_cjac_4177 | 97.95 | 63.93 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000018999 retrocopies