Parental gene:

ENSCJAG00000016908

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:150678076..150725514(+)


>ENSCJAG00000016908
ATGCATGTCACCCTGAAGACCCTCCAGCAGCGGACCTTCAAGATAGACATCGACCCCGAGGAGAAGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTCAAAGAATATAAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACCAAACCCAAAGCAGTG
TCAACACCAGCACCAGCTACAACTCAGCAGTCAGCTCCCGCCAGCACTACAGCAGTTACTTCCTCCACGGTAACAACTGT
GGCTCAGGCTCCAACCCCTGCCCCTGCTTTGGCGCCCACTTCCACACCATCATCCGTCACTCCAGCATCAGCGACAGCAT
CTCCTGAACCTGCACCTGCTAGTGCAACTAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAGACACCAGTGGCTAGTAGC
CCAACATCAACTGACAGTACATCAGGAGACTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGCACTTGTGACGGG
TCAGTCTTATGAGAATATGGTCACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTTTTAATGGGAATCCCTGGAGATAGAGAAAATCAGGCTGTGGTTGAC
CCCCCTCAAGCAGCTAGTACTGGGGCGCCTCAGTCTTCAGCAGTGGCTGCAGCTGCAGCGACTACAACAGCAACGACTAC
AACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAGCCTCAGTTTCAACAGATGAGACAAATTATTCAAC
AGAATCCTTCCCTGCTCCCAGCGTTACTGCAGCAGATAGGTCGAGAGAATCCTCAATTACTTCAGCAAATTAGCCAACAC
CAGGAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGCGGTCAAGGAGGAGGAGGTGGAGGTGGCAGTGG
AGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTATATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAA
AGGCATTAGGATTTCCCGAAGGACTTGTGATCCAAGCATATTTTGCTTGTGAGAAGAATGAAAATTTGGCTGCCAATTTT
CTTCTACAGCAAAACTTTGATGAAGATTGA

Library Parental gene expression (RPM)
SRP051959_colon 43 .80 RPM
SRP051959_heart 51 .67 RPM
SRP051959_kidney 53 .54 RPM
SRP051959_liver 53 .03 RPM
SRP051959_lung 45 .84 RPM
SRP051959_lymph_node 38 .04 RPM
SRP051959_skeletal_muscle 71 .13 RPM
SRP051959_spleen 48 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001926 ortholog_one2many 1 retrogene
retro_btau_877,
Callithrix jacchus ENSCJAG00000004494 within_species_paralog 1 retrogene
retro_cjac_3896,
Dasypus novemcinctus ENSDNOG00000001174 possible_ortholog 2 retrogenes
retro_dnov_1982, retro_dnov_989,
Equus caballus ENSECAG00000021928 ortholog_one2many 1 retrogene
retro_ecab_361,
Homo sapiens ENSG00000119318 ortholog_one2many 2 retrogenes
retro_hsap_2611, retro_hsap_3754,
Gorilla gorilla ENSGGOG00000002511 ortholog_one2many 1 retrogene
retro_ggor_1829,
Loxodonta africana ENSLAFG00000007533 possible_ortholog 1 retrogene
retro_lafr_1109,
Macaca mulatta ENSMMUG00000014944 ortholog_one2many 2 retrogenes
retro_mmul_1476, retro_mmul_1725,
Nomascus leucogenys ENSNLEG00000017319 ortholog_one2many 1 retrogene
retro_nleu_1590,
Oryctolagus cuniculus ENSOCUG00000007316 possible_ortholog 1 retrogene
retro_ocun_1429,
Otolemur garnettii ENSOGAG00000014216 ortholog_one2many 1 retrogene
retro_ogar_3040,
Pongo abelii ENSPPYG00000019477 ortholog_one2many 2 retrogenes
retro_pabe_2344, retro_pabe_3162,
Pan troglodytes ENSPTRG00000021229 ortholog_one2many 1 retrogene
retro_ptro_1760,
Sarcophilus harrisii ENSSHAG00000011925 ortholog_many2many 1 retrogene
retro_shar_248,
Sus scrofa ENSSSCG00000005436 ortholog_one2many 1 retrogene
retro_sscr_770,
Tursiops truncatus ENSTTRG00000007597 ortholog_one2many 1 retrogene
retro_ttru_1401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3865 87.71 100.00
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2. retro_cjac_4184 94.38 100.00
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Download FASTA sequences of all ENSCJAG00000016908 retrocopies