Parental gene:

BET1, ENSCJAG00000013720

Aliases:None
Description:Bet1 golgi vesicular membrane trafficking protein [Source:HGNC Symbol;Acc:14562]
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:53524681..53536931(+)


>ENSCJAG00000013720
AAGCTCCCCTCCTGCTGTATTAACCACTTTCTTCCTTTTTATAGCCACATGTCTTCAGTGGGTGAAGGAGTACCTCCTGG
CAACTATGGAAACTATGGCTATGCTAATAGTGGGTACAGTGCCTGTGAAGAAGAAAATGAGAGACTCACTGAAAGTCTGA
GAAGCAAAGTAACTGCTATAAAATCTCTTTCCATTGAAATAGGCCATGAAGTTAAAACCCAGAATAACTTATTAGCCGAA
ATGGATTCACAATTTGATTCCACAACTGGATTTCTAGGTAAAACTATGGGCAAACTGAAGATTTTATCCAGAGGGAGCCA
AACAAGGCTACTGTGTTATATGATGCTGTTTTCTTTATTTGTCTTTTTTGTCATTTATTGGATTATTAAACGGAGGTGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .84 RPM
SRP051959_heart 6 .65 RPM
SRP051959_kidney 16 .35 RPM
SRP051959_liver 9 .92 RPM
SRP051959_lung 8 .41 RPM
SRP051959_lymph_node 6 .32 RPM
SRP051959_skeletal_muscle 3 .78 RPM
SRP051959_spleen 10 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003424 ortholog_one2one 1 retrogene
retro_btau_1054,
Choloepus hoffmanni ENSCHOG00000001276 ortholog_one2one 1 retrogene
retro_chof_2211,
Callithrix jacchus ENSCJAG00000000895 within_species_paralog 1 retrogene
retro_cjac_3988,
Dasypus novemcinctus ENSDNOG00000001012 ortholog_one2one 3 retrogenes
retro_dnov_1683, retro_dnov_393, retro_dnov_60,
Homo sapiens ENSG00000105829 ortholog_one2one 1 retrogene
retro_hsap_3809,
Gorilla gorilla ENSGGOG00000002176 ortholog_one2one 1 retrogene
retro_ggor_2560,
Loxodonta africana ENSLAFG00000000587 ortholog_one2one 1 retrogene
retro_lafr_1023,
Macaca mulatta ENSMMUG00000000007 ortholog_one2one 1 retrogene
retro_mmul_1656,
Nomascus leucogenys ENSNLEG00000015441 ortholog_one2one 1 retrogene
retro_nleu_2151,
Oryctolagus cuniculus ENSOCUG00000017029 ortholog_one2one 2 retrogenes
retro_ocun_1116, retro_ocun_355,
Ochotona princeps ENSOPRG00000004536 ortholog_one2one 4 retrogenes
retro_opri_201, retro_opri_249, retro_opri_388, retro_opri_880,
Pan troglodytes ENSPTRG00000019408 ortholog_one2one 1 retrogene
retro_ptro_2584,
Rattus norvegicus ENSRNOG00000011008 ortholog_one2one 2 retrogenes
retro_rnor_2195, retro_rnor_2196,
Sus scrofa ENSSSCG00000015325 ortholog_one2one 2 retrogenes
retro_sscr_455, retro_sscr_516,
Tupaia belangeri ENSTBEG00000000765 ortholog_one2one 2 retrogenes
retro_tbel_3115, retro_tbel_4272,
Tarsius syrichta ENSTSYG00000009729 ortholog_one2one 2 retrogenes
retro_tsyr_136, retro_tsyr_1843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1411 79.09 92.37
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2. retro_cjac_2019 56.38 68.94
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3. retro_cjac_3155 75.64 66.10
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Download FASTA sequences of all ENSCJAG00000013720 retrocopies