Parental gene:

THUMPD1, ENSCJAG00000009499

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:20128657..20136649(-)


>ENSCJAG00000009499
ATGGCGGCCCCTGCCCAGCAGCCTGCTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGTTGGCCAAGCG
GGCTCGGCGCTGCGACGCCGGCGGGCCCCATCAGCTAGAGCCCGGGCTGCAGGGCATCCTCATCACCTGCAACATGAACG
AGCGCAAGTGCGTGGAGGAGGCTTACAGCCTACTCAACGAATATGGCGACGACATGTATGGGCCAGAAAAGCTTACAGAC
AAGGATCAGCAGCCTTCTGGAAGTGAGGGAGAAGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGATATTAA
GGCATCTACAGAGATGAGACTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTCGTCTTCATCAGGACACTTG
GAATAGAACCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAGAAGAAGACTCGAGTTATTCTA
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCACATGAATCGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGGGCACCCTCAATTCAGAAAATAAAGTGAATCTGACCAATCCACAGTACACGGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCGTCACAGCTTATCTCAAAGCAGGGAAATGGTACAGAAACTAAATTGGAATCTGCTGACA
AATCAGATCAAAACAACATAGCAGAAGGAAAAAATAACCAGCAGGTACCACAGAATACTGATGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCCCAGGTGGTGAATGAGGGAGGAGGCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACCTCTCATAG

Library Parental gene expression (RPM)
SRP051959_colon 15 .49 RPM
SRP051959_heart 16 .12 RPM
SRP051959_kidney 47 .66 RPM
SRP051959_liver 17 .11 RPM
SRP051959_lung 18 .51 RPM
SRP051959_lymph_node 18 .22 RPM
SRP051959_skeletal_muscle 11 .66 RPM
SRP051959_spleen 20 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000008919 ortholog_many2many 1 retrogene
retro_cpor_71,
Felis catus ENSFCAG00000015158 ortholog_one2many 1 retrogene
retro_fcat_195,
Homo sapiens ENSG00000066654 ortholog_one2many 1 retrogene
retro_hsap_2521,
Gorilla gorilla ENSGGOG00000005231 ortholog_one2many 1 retrogene
retro_ggor_1573,
Macaca mulatta ENSMMUG00000004225 ortholog_one2many 1 retrogene
retro_mmul_1599,
Monodelphis domestica ENSMODG00000006971 ortholog_many2many 1 retrogene
retro_mdom_54,
Nomascus leucogenys ENSNLEG00000012369 ortholog_one2many 1 retrogene
retro_nleu_1443,
Pan troglodytes ENSPTRG00000007848 ortholog_one2many 1 retrogene
retro_ptro_1466,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_915 86.31 94.90
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Download FASTA sequences of all ENSCJAG00000009499 retrocopies