Parental gene:

SC5D, ENSCJAG00000007436

Aliases:None
Description:sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:19043797..19060672(+)


>ENSCJAG00000007436
ATGGACCTTGTACTCAGTGTTGCAGATTATTATTTTTTTACACCATACATATATCCAGCTACCTGGCCAGAAGATGACAT
CCTCCGACAAGCTATTAGTCTTCTGATTATAGCAAATGTTGGTGCTTACATCCTTTATTTCTTCTGTGCAACATTGAGCT
ATTATTTTGTCTTTGATCATGCATTAATGAAACATCCACAATTTTTAAAGAATCAAGTCCGTCGAGAGATTAAGTTTACT
GTCCAGGCATTGCCATGGATAAGTATACCTACTGTTTCACTGTTCCTGCTGGAGATAAGAGGTTACAGCAAGTTACATGA
TGACCTAGGAGAGTTTCCATATGGATTGCTTGAACTCGTTGTTAGTGTAATATCTTTCCTGTTTTTCACTGACATGTTCA
TCTACTGGATTCACAGAGGCCTTCATCATAGACTGGTATATAAGCACCTACATAAACCTCATCATGTTTGGAAGATTCCT
ACTCCATTTGCAAGTCACGCTTTTCACCCTGTCGATGGCTTTCTTCAGAGTCTACCTTACCATGTATACCCTTTTATCTT
TCCATTACACAAGGTGGTTTATTTAAGTCTATACATCTTGGTTAATATCTGGACAATTTCCATTCATGATGGTGATTTTC
GTGTCCCCCAAATCTTACAGCCATTTATTAATGGCTCAGCTCATCATACAGACCACCATATGTTCTTTGACTATAATTAT
GGACAGTATTTTACTTTGTGGGATAGGATTGGAGGCTCATTCAAAAATCCTTCCTCCTTTGAGGGGAAGGGACCACTCAG
TTATGTGAAGAACATGACAGAAGGAAAGTGCAGCAGCCATGCAGGAAATGGTTGTACGAATGAAAAATTATTCAATGGAG
AGTTTACGAAGACTGAATAG

Library Parental gene expression (RPM)
SRP051959_colon 25 .85 RPM
SRP051959_heart 26 .78 RPM
SRP051959_kidney 32 .30 RPM
SRP051959_liver 469 .34 RPM
SRP051959_lung 16 .28 RPM
SRP051959_lymph_node 10 .46 RPM
SRP051959_skeletal_muscle 8 .01 RPM
SRP051959_spleen 10 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019246 ortholog_one2one 1 retrogene
retro_btau_813,
Canis familiaris ENSCAFG00000011805 ortholog_one2one 1 retrogene
retro_cfam_291,
Monodelphis domestica ENSMODG00000013028 ortholog_one2one 1 retrogene
retro_mdom_1086,
Mustela putorius furo ENSMPUG00000005754 ortholog_one2one 1 retrogene
retro_mputfur_484,
Ochotona princeps ENSOPRG00000003219 ortholog_one2one 1 retrogene
retro_opri_1143,
Ictidomys tridecemlineatus ENSSTOG00000008946 ortholog_one2one 1 retrogene
retro_itri_964,
Tupaia belangeri ENSTBEG00000000490 ortholog_one2one 1 retrogene
retro_tbel_4326,
Tarsius syrichta ENSTSYG00000011139 ortholog_one2one 1 retrogene
retro_tsyr_1097,
Tursiops truncatus ENSTTRG00000006908 ortholog_one2one 1 retrogene
retro_ttru_777,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1911 97.67 100.00
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Download FASTA sequences of all ENSCJAG00000007436 retrocopies