Parental gene:

PTPN2, ENSCJAG00000005102

Aliases:None
Description:Tyrosine-protein phosphatase non-receptor type [Source:UniProtKB/TrEMBL;Acc:F7GM04]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:43935436..44053917(-)


>ENSCJAG00000005102
ATGCCCACAACTATCGAGCAGGAGTTTGAGGAGCTGGATGCTCATCGTCGCTGGCAGCCGCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCCGAGAATGATTATATTAATGCCAGCTTAATTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCACAGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGA
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCACGGGCCTGCGGTGA
TCCACTGTAGTGCAGGCATTGGGCGCTCTGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATTAAACAAGTGTTATTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACAATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCTTTTGATTATTCACCAAACAAAATAACAACTGAAAAATACAATGGAAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATGTACAGGACTTTCCTCTAAAATGCAAGATACAATGGAGGAGAACAGTGAGAG
TGCTCTACGGAAGCGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTGTGTCAGTCATTTTGGTT
GGCGCTTTTGTTGGCTGGACACTGTTTTTTCAGCAAAATACCCTATAA

Library Parental gene expression (RPM)
SRP051959_colon 15 .86 RPM
SRP051959_heart 13 .23 RPM
SRP051959_kidney 18 .50 RPM
SRP051959_liver 14 .06 RPM
SRP051959_lung 22 .53 RPM
SRP051959_lymph_node 34 .79 RPM
SRP051959_skeletal_muscle 8 .84 RPM
SRP051959_spleen 28 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000867 ortholog_one2one 1 retrogene
retro_chof_2231,
Callithrix jacchus ENSCJAG00000000531 within_species_paralog 1 retrogene
retro_cjac_4108,
Callithrix jacchus ENSCJAG00000012464 other_paralog 1 retrogene
retro_cjac_1051,
Dasypus novemcinctus ENSDNOG00000016588 ortholog_one2one 1 retrogene
retro_dnov_1466,
Erinaceus europaeus ENSEEUG00000005636 ortholog_one2one 1 retrogene
retro_eeur_370,
Echinops telfairi ENSETEG00000005577 ortholog_one2one 2 retrogenes
retro_etel_1743, retro_etel_1942,
Homo sapiens ENSG00000175354 ortholog_one2one 2 retrogenes
retro_hsap_1186, retro_hsap_480,
Gorilla gorilla ENSGGOG00000010259 ortholog_one2many 2 retrogenes
retro_ggor_453, retro_ggor_925,
Loxodonta africana ENSLAFG00000011818 ortholog_one2many 1 retrogene
retro_lafr_701,
Macropus eugenii ENSMEUG00000005156 ortholog_one2one 1 retrogene
retro_meug_653,
Monodelphis domestica ENSMODG00000021422 ortholog_one2one 1 retrogene
retro_mdom_1225,
Nomascus leucogenys ENSNLEG00000009074 ortholog_one2one 3 retrogenes
retro_nleu_2112, retro_nleu_351, retro_nleu_894,
Otolemur garnettii ENSOGAG00000028605 ortholog_one2one 1 retrogene
retro_ogar_3429,
Pongo abelii ENSPPYG00000008983 ortholog_one2one 3 retrogenes
retro_pabe_1077, retro_pabe_1144, retro_pabe_989,
Pan troglodytes ENSPTRG00000009884 ortholog_one2one 2 retrogenes
retro_ptro_361, retro_ptro_813,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1577 86.78 58.40
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Download FASTA sequences of all ENSCJAG00000005102 retrocopies