Parental gene:

PTPN2, ENSEEUG00000005636

Aliases:None
Description:protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_7312:19033..110051(-)


>ENSEEUG00000005636
ATGTCTGCCACCATCGAGCGGGAGTTTGAAGAGCTGGATGCTCAGAATCGCTGGCAGCAGCTATACTTGGAAATTCGCAA
TGAGTCCCATGACTATCCTCACAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGCGTTAAGTTGCAAAATGCTGAAAATGATTATATTAATGCCAGCTTAGTTGACATAGAAGAGGCACGA
AGGAGTTACATCTTAACACAGGGACCACTTCCTAATACAGGTTGTCATTTCTGGCTTATGGTTTGGCAGCAAAAGACCAA
AGCAGTTGTCATGCTAAACCGAGTTGTGGAGAAAGAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGTGGTGAAGCCAGAACCATCTCTCACTTCCATTACACTACCTGGCCAGATTTTGGAGTCCCTGA
GTCACCAGCTTCATTTCTCAATTTCTTATTTAAAGTGAGAGAATCTGGCTCCCTGAATCCTGAGCACGGGCCTGCGGTGA
TCCACTGTAGTGCAGGCATTGGGCGGTCAGGCACGTTTTCCCTAGTAGATACCTCTCTTGTTCTGATGGAAAAGGGAGAT
GAAATTAATATTAAACAACTATTACTGAATATGAGAAAGTACCGAATGGGACTTATTCAGACACCAGATCAACTCAGATT
TTCGTATATGACTATTATAGAAGGAGCAAAATTCATAAAGGGAGGTCCAAGTNNNNNNAAAATGTGGAAAGAACTGTCTA
AAGAAGACTTACATCCTGCTTTTGATCACTCACCAGCCAGAATAATAACTGAAAAGTACAATGGCAGCAGGGTAAGCCTA
GAAGAAGGAAAGACGACAGGTGACAGACATACAGGATTATCCTCTAGAACTCAAGATCCTGTGGAGGAGAAAACAGAAAG
TGTTCTGCGGAAGCGTATCCGAGAGGACAGAAAAGCTATCACGGCTCAGAGAGTGCAGCAGATGAAGCAGAGGCTAAATG
AGACTGAACGAAAAAGAAAAAGGTGGTTATATTGGCAGCCTATTCTCACTAAGACGGGGTTTGTATTGGTCATTTTGATT
GGCACTTTGGTTGGCTGGACACTGTTTTTTCGGCAAAGTATCCTATAA

Library Parental gene expression (RPM)
SRP017611_brain 5 .64 RPM
SRP017611_kidney 7 .31 RPM
SRP017611_liver 3 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000867 ortholog_one2one 1 retrogene
retro_chof_2231,
Callithrix jacchus ENSCJAG00000005102 ortholog_one2one 1 retrogene
retro_cjac_1577,
Dasypus novemcinctus ENSDNOG00000016588 ortholog_one2one 1 retrogene
retro_dnov_1466,
Echinops telfairi ENSETEG00000005577 ortholog_one2one 2 retrogenes
retro_etel_1743, retro_etel_1942,
Homo sapiens ENSG00000175354 ortholog_one2one 2 retrogenes
retro_hsap_1186, retro_hsap_480,
Gorilla gorilla ENSGGOG00000010259 ortholog_one2many 2 retrogenes
retro_ggor_453, retro_ggor_925,
Loxodonta africana ENSLAFG00000011818 ortholog_one2many 1 retrogene
retro_lafr_701,
Macropus eugenii ENSMEUG00000005156 ortholog_one2one 1 retrogene
retro_meug_653,
Monodelphis domestica ENSMODG00000021422 ortholog_one2one 1 retrogene
retro_mdom_1225,
Nomascus leucogenys ENSNLEG00000009074 ortholog_one2one 3 retrogenes
retro_nleu_2112, retro_nleu_351, retro_nleu_894,
Otolemur garnettii ENSOGAG00000028605 ortholog_one2one 1 retrogene
retro_ogar_3429,
Pongo abelii ENSPPYG00000008983 ortholog_one2one 3 retrogenes
retro_pabe_1077, retro_pabe_1144, retro_pabe_989,
Pan troglodytes ENSPTRG00000009884 ortholog_one2one 2 retrogenes
retro_ptro_361, retro_ptro_813,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_370 94.91 52.05
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Download FASTA sequences of all ENSEEUG00000005636 retrocopies