Parental gene:

CDC20, ENSCJAG00000003414

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:78079273..78083422(+)


>ENSCJAG00000003414
ATGGCTCAGTTCGCGTTCGAGAGTGACCTGCACTCGCTGCTTCAGCTGGATACACCCATCCCCAATGCACCCCCCGCGCG
CTGGCAGCGCAAAGCCAAGGAAGCCGCAGGCCCGGCCCCTTCACCCATGCGGGCCGCCAACCGATCCCACAGCGCTGGCA
GGACTCCGGGCCGAACTCCTGGCAAATCCAGTTCCAAGGTTCAGACCACTCCTAGCAAACCTGGCGGTGACCGCTATATC
CCCCAACGCAGTGCTGCCCAGATGGAGGTGGCCAGCTTCCTCCTGAGCAAGGAGAACCAGCCTGAAAACAGCCAGACGCC
CACCAAGAAGGAATATCAGAAAGCCTGGGCTTTGAACCTGAACGGTTTTGATGTAGAGGAAGCCAAGATCCTTCGGCTCA
GTGGAAAACCACAAAATGCCCCAGAGGGTTACCAGAACAGACTGAAAGTACTCTACAGTCAAAAGGCCACGCCTGGTTCC
AGCCGGAAGACCTGCCGTTACATTCCTTCCCTGCCAGATCGTATCCTGGATGCCCCAGAAATCCGAAATGACTACTACCT
GAACCTTGTGGATTGGAGCTCTGGGAATGTCCTGGCTGTGGCACTGGACAACAGTGTGTACCTGTGGAGTGCAAGCTCTG
GTGACATCCTGCAGCTTTTGCAAATGGAGCAGCCTGGGGAATATGTATCCTCTGTGGCCTGGATCAAAGAGGGCAACTAC
TTGGCTGTGGGCACCAGCAGTGCTGAGGTGCAGCTATGGGATGTGCAGCAGCAGAAACGGCTTCGAAATATGACCAGTCA
CTCTGCCCGAGTGGGCTCCCTAAGTTGGAACAGCTATATCCTGTCCAGTGGATCACGTTCTGGCCATATCCACCACCATG
ATGTTCGGGTAGCAGAACACCATGTGGCCACACTGAGTGGCCACAGCCAGGAAGTGTGTGGGCTGCGCTGGGCCCCAGAT
GGACGACATTTGGCCAGTGGTGGCAATGATAACTTGGTCAATGTGTGGCCTAGTGCTCCTGGAGAGGGTGGCTGGGTTCC
TCTGCAAACATTCACCCAGCATCAAGGGGCTGTCAAGGCTGTAGCATGGTGTCCCTGGCAGTCCAATGTCCTGGCAACAG
GAGGAGGCACCAGTGATCGACACATTCGCATCTGGAATGTGTGCTCTGGGGCTTGTCTGAGTGCTGTGGATGCCCATTCC
CAGGTGTGCTCCATCCTCTGGTCTCCCCACTACAAGGAGCTCATCTCAGGCCACGGCTTTTCACAGAACCAGCTGGTTAT
CTGGAAGTACCCAACCATGGCCAAGGTGGCTGAACTGAAAGGTCACACATCCCGGGTCCTGAGTCTGACCATGAGCCCAG
ATGGGGCCACAGTGGCATCTGCAGCAGCAGATGAGACCCTGAGGCTATGGCGCTGTTTTGAGTTGGACCCTGCACGGCGG
CGGGAGCGGGAGAAGGCTAATGCAGCTAAAAGCAGCCTCATCCACCAAGGCATCCGCTGA

Library Parental gene expression (RPM)
SRP051959_colon 20 .39 RPM
SRP051959_heart 0 .86 RPM
SRP051959_kidney 0 .82 RPM
SRP051959_liver 0 .50 RPM
SRP051959_lung 2 .39 RPM
SRP051959_lymph_node 5 .05 RPM
SRP051959_skeletal_muscle 0 .46 RPM
SRP051959_spleen 4 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006680 ortholog_one2one 2 retrogenes
retro_chof_2172, retro_chof_2286,
Homo sapiens ENSG00000117399 ortholog_one2one 1 retrogene
retro_hsap_4187,
Gorilla gorilla ENSGGOG00000010419 ortholog_one2many 1 retrogene
retro_ggor_96,
Mus musculus ENSMUSG00000006398 ortholog_one2one 1 retrogene
retro_mmus_1536,
Nomascus leucogenys ENSNLEG00000013419 ortholog_one2one 1 retrogene
retro_nleu_2847,
Pongo abelii ENSPPYG00000001448 ortholog_one2one 1 retrogene
retro_pabe_3428,
Pan troglodytes ENSPTRG00000000634 ortholog_one2one 1 retrogene
retro_ptro_2843,
Tarsius syrichta ENSTSYG00000012703 ortholog_one2one 3 retrogenes
retro_tsyr_1560, retro_tsyr_442, retro_tsyr_938,
Tursiops truncatus ENSTTRG00000010813 ortholog_one2one 1 retrogene
retro_ttru_1309,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1608 93.43 100.00
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Download FASTA sequences of all ENSCJAG00000003414 retrocopies