Parental gene:

CLIC1, ENSCJAG00000002788

Aliases:None
Description:chloride intracellular channel 1 [Source:HGNC Symbol;Acc:2062]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:32298652..32305554(-)


>ENSCJAG00000002788
ATGGCTGAAGAACAACCGCCGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCGAAGATTGGGAACTGCCCCTTCTC
CCAGAGACTGTTCATGGTCCTGTGGCTCAAGGGAGTCACCTTCAACGTTACCACAGTTGACACCAAGAGGCGGACCGAGA
CAGTGCAGAAGCTGTGCCCAGGAGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATT
GAGGAATTTCTGGAGGCAGTGCTATGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGG
GCTGGACATATTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGATAATCTGGAGAAGGGACTCC
TGAAAGCCCTGAAGGTTTTAGACAATTACTTAACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGTGCTGAAGATGAG
GGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACCCTGGCTGACTGCAACCTGTTGCCAAAGCTACACATAGT
ACAGGTGGTATGTAAGAAATACAGGGGATTCACTATCCCTGAGGCCTTCCGGGGAGTGCATCGGTACTTGAGCAATGCCT
ACGCAAGGGAAGAATTCGCCTCCACCTGTCCAGATGATGAGGAAATTGAGCTCGCCTATGAGCAAGTGGCCAAGGCCCTC
AAATAA

Library Parental gene expression (RPM)
SRP051959_colon 88 .77 RPM
SRP051959_heart 22 .50 RPM
SRP051959_kidney 34 .63 RPM
SRP051959_liver 11 .16 RPM
SRP051959_lung 48 .10 RPM
SRP051959_lymph_node 42 .40 RPM
SRP051959_skeletal_muscle 8 .63 RPM
SRP051959_spleen 40 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000621 ortholog_many2many 2 retrogenes
retro_cfam_481, retro_cfam_525,
Callithrix jacchus ENSCJAG00000020833 within_species_paralog 2 retrogenes
retro_cjac_1713, retro_cjac_461,
Dipodomys ordii ENSDORG00000016424 ortholog_one2many 3 retrogenes
retro_dord_506, retro_dord_524, retro_dord_550,
Felis catus ENSFCAG00000019049 ortholog_one2many 1 retrogene
retro_fcat_1301,
Gorilla gorilla ENSGGOG00000011331 ortholog_one2one 1 retrogene
retro_ggor_2153,
Macropus eugenii ENSMEUG00000015201 ortholog_one2many 1 retrogene
retro_meug_254,
Macaca mulatta ENSMMUG00000029827 ortholog_one2many 3 retrogenes
retro_mmul_1269, retro_mmul_290, retro_mmul_902,
Monodelphis domestica ENSMODG00000015240 ortholog_one2many 1 retrogene
retro_mdom_1166,
Nomascus leucogenys ENSNLEG00000006264 ortholog_one2many 3 retrogenes
retro_nleu_1296, retro_nleu_24, retro_nleu_2894,
Oryctolagus cuniculus ENSOCUG00000022545 ortholog_one2many 1 retrogene
retro_ocun_1449,
Otolemur garnettii ENSOGAG00000031840 ortholog_one2many 4 retrogenes
retro_ogar_2402, retro_ogar_3273, retro_ogar_407, retro_ogar_982,
Procavia capensis ENSPCAG00000013268 ortholog_one2many 1 retrogene
retro_pcap_30,
Pongo abelii ENSPPYG00000016456 ortholog_one2one 2 retrogenes
retro_pabe_1514, retro_pabe_886,
Pan troglodytes ENSPTRG00000017982 ortholog_one2one 2 retrogenes
retro_ptro_1238, retro_ptro_724,
Sarcophilus harrisii ENSSHAG00000006493 ortholog_many2many 1 retrogene
retro_shar_28,
Tarsius syrichta ENSTSYG00000001540 ortholog_one2many 2 retrogenes
retro_tsyr_1452, retro_tsyr_722,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2972 97.12 100.00
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Download FASTA sequences of all ENSCJAG00000002788 retrocopies