Parental gene:

CLIC1, ENSCAFG00000000621

Aliases:None
Description:Canis lupus familiaris chloride intracellular channel 1 (CLIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252138]
Organism:Dog (Canis familiaris)
Coordinates:12:1209772..1215229(-)


>ENSCAFG00000000621
CGCCGCTTCCTGGTCCCCGTCGCAACCATGGCTGAAGAACAACCTCAGGTTGAACTGTTCGTGAAGGCCGGCAGTGATGG
GGCCAAGATTGGGAACTGCCCCTTCTCCCAGAGACTGTTCATGGTACTCTGGCTCAAAGGAGTAACCTTCAACGTAACCA
CTGTTGACACCAAGAGGCGGACCGAGACAGTACAGAAGCTGTGCCCAGGAGGGCAGCTCCCATTCCTTCTGTATGGCACT
GAAGTACACACAGACACCAACAAGATTGAGGAGTTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACCCCAAGCTGGCAGC
TCTGAACCCTGAATCCAACACGGCTGGGCTGGACATATTTGCCAAATTTTCTGCTTACATCAAGAATTCAAACCCGGCAC
TCAATGATAATCTGGAGAAGGGGCTCCTGAAAGCCCTGAAAGTTTTAGACAATTACTTGACATCCCCCCTCCCAGAAGAA
GTGGATGAGACCAGTGCTGAGGATGAGGGCATCTCACAGAGGAAGTTTCTGGATGGCAATGAGCTCACTCTGGCTGACTG
CAACCTCTTGCCAAAACTCCACATAGTACAGGTGGTGTGTAAGAAATACAGGGGATTCTCCATCCCAGAGGTGTTCCGCG
GAGTGCATCGGTACTTGCGTAATGCCTATGCTCGGGAAGAGTTTGCCTCCACCTGTCCAGATGATGAGGAGATCGAGCTG
GCTTATGAGCAAGTGGCCAAGGCCCTCAAAAAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 19 .45 RPM
SRP017611_brain 8 .34 RPM
SRP017611_kidney 60 .62 RPM
SRP017611_liver 11 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002788 ortholog_many2many 1 retrogene
retro_cjac_2972,
Dipodomys ordii ENSDORG00000016424 ortholog_one2many 3 retrogenes
retro_dord_506, retro_dord_524, retro_dord_550,
Felis catus ENSFCAG00000019049 ortholog_one2many 1 retrogene
retro_fcat_1301,
Gorilla gorilla ENSGGOG00000011331 ortholog_many2many 1 retrogene
retro_ggor_2153,
Macropus eugenii ENSMEUG00000015201 ortholog_one2many 1 retrogene
retro_meug_254,
Macaca mulatta ENSMMUG00000029827 ortholog_many2many 3 retrogenes
retro_mmul_1269, retro_mmul_290, retro_mmul_902,
Monodelphis domestica ENSMODG00000015240 ortholog_one2many 1 retrogene
retro_mdom_1166,
Nomascus leucogenys ENSNLEG00000006264 ortholog_many2many 3 retrogenes
retro_nleu_1296, retro_nleu_24, retro_nleu_2894,
Oryctolagus cuniculus ENSOCUG00000022545 ortholog_one2many 1 retrogene
retro_ocun_1449,
Otolemur garnettii ENSOGAG00000031840 ortholog_one2many 4 retrogenes
retro_ogar_2402, retro_ogar_3273, retro_ogar_407, retro_ogar_982,
Procavia capensis ENSPCAG00000013268 ortholog_one2many 1 retrogene
retro_pcap_30,
Pongo abelii ENSPPYG00000016456 ortholog_one2many 2 retrogenes
retro_pabe_1514, retro_pabe_886,
Pan troglodytes ENSPTRG00000017982 ortholog_one2many 2 retrogenes
retro_ptro_1238, retro_ptro_724,
Sarcophilus harrisii ENSSHAG00000006493 ortholog_many2many 1 retrogene
retro_shar_28,
Tarsius syrichta ENSTSYG00000001540 ortholog_one2many 2 retrogenes
retro_tsyr_1452, retro_tsyr_722,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_481 95.56 98.80
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2. retro_cfam_525 94.69 97.61
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Download FASTA sequences of all ENSCAFG00000000621 retrocopies