Parental gene:

PSMA1, ENSCHOG00000005395

Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_3073:2897..49676(-)


>ENSCHOG00000005395
ATGCAGCTTAGAAAGGTGAAGTTTCGTAACCAGTATGACAATGATGTCACTGTTTGGAGCCCTCAGGGCAGAATTCATCA
AATTGAATATGCAATGGAAGCTGTCAAGCAAGGTTCAGCCACAGTTGGGCTGAAATCGAAAACCCATGCAGTGTTGGTTG
CACTGAAGAGGGCACAATCAGAGCTTGCAGCCCATCAAAAAAAAATTCTCCATGTTGACAACCATATTGGAATCTCAATT
GCGGGGCTTACTGCTGATGCTAGACTGTTATGTAATTTCATGCGCCAGGAGTGTTTGGATTCCAGATTTGTATTTGACAG
ACCTCTTCCCGTGTCTCGTCTTGTATCGCTAATTGGAAGCAAGACCCAGATACCAACCCAACGATATGGCCGAAGACCAT
ATGGTGTGGGACTGCTCATTGCTGGTTATGATGATATGGGCCCTCATATTTTCCAAACCTGTCCATCTGCAAACTATTTT
GACTGCAGAGCTATGTCCATTGGAGCCCGTTCTCAGTCAGCACGTACTTACTTGGAAAGACATATGTCTGAGTTTATGGA
GTGTAATTTGAATGAACTGGTTAAACATGGTCTGCGTGCCTTAAGAGAGACACTTCCTGCAGAGCAGGACCTAACTACAA
AGAATGTTTCCATTGGAATTGTTGGTCAAGACTTAGAGTTTACGATCTATGATGATGATGATGTGTCTCCATTCCTGGAA
GGTCTTGAGGAAAGACCACAGAGAAAGACACAGCCTGCTCAACCTTCTGAAGAACCTGCAGAAAAGGCTGATGAACCAAT
GGAACATTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002440 ortholog_one2one 2 retrogenes
retro_amel_1733, retro_amel_1903,
Bos taurus ENSBTAG00000006564 ortholog_one2one 1 retrogene
retro_btau_1833,
Equus caballus ENSECAG00000024086 ortholog_one2one 1 retrogene
retro_ecab_1078,
Felis catus ENSFCAG00000011381 ortholog_one2one 1 retrogene
retro_fcat_972,
Homo sapiens ENSG00000129084 ortholog_one2one 1 retrogene
retro_hsap_4720,
Gorilla gorilla ENSGGOG00000001416 ortholog_one2one 1 retrogene
retro_ggor_2933,
Macropus eugenii ENSMEUG00000011112 ortholog_one2one 1 retrogene
retro_meug_71,
Myotis lucifugus ENSMLUG00000009251 ortholog_one2one 4 retrogenes
retro_mluc_2444, retro_mluc_2445, retro_mluc_2463, retro_mluc_2515,
Macaca mulatta ENSMMUG00000016446 ortholog_one2one 1 retrogene
retro_mmul_2509,
Mustela putorius furo ENSMPUG00000013199 ortholog_one2one 4 retrogenes
retro_mputfur_1243, retro_mputfur_224, retro_mputfur_338, retro_mputfur_825,
Mus musculus ENSMUSG00000030751 ortholog_one2one 1 retrogene
retro_mmus_831,
Nomascus leucogenys ENSNLEG00000017705 ortholog_one2one 1 retrogene
retro_nleu_1990,
Oryctolagus cuniculus ENSOCUG00000000439 ortholog_one2one 2 retrogenes
retro_ocun_1461, retro_ocun_1490,
Otolemur garnettii ENSOGAG00000011622 ortholog_one2one 3 retrogenes
retro_ogar_2267, retro_ogar_2644, retro_ogar_992,
Ochotona princeps ENSOPRG00000013677 ortholog_one2one 1 retrogene
retro_opri_370,
Pongo abelii ENSPPYG00000003466 ortholog_one2one 2 retrogenes
retro_pabe_1883, retro_pabe_3664,
Pan troglodytes ENSPTRG00000003385 ortholog_one2one 1 retrogene
retro_ptro_3137,
Sarcophilus harrisii ENSSHAG00000015626 ortholog_one2one 1 retrogene
retro_shar_217,
Ictidomys tridecemlineatus ENSSTOG00000006270 ortholog_one2one 2 retrogenes
retro_itri_1470, retro_itri_987,
Tupaia belangeri ENSTBEG00000012037 ortholog_one2one 3 retrogenes
retro_tbel_2629, retro_tbel_323, retro_tbel_982,
Tarsius syrichta ENSTSYG00000003869 ortholog_one2one 2 retrogenes
retro_tsyr_1723, retro_tsyr_374,
Vicugna pacos ENSVPAG00000008820 ortholog_one2one 3 retrogenes
retro_vpac_344, retro_vpac_648, retro_vpac_82,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_77 97.71 97.40
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2. retro_chof_155 78.68 95.54
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3. retro_chof_267 86.80 72.86
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4. retro_chof_459 69.06 50.56
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5. retro_chof_519 86.60 76.95
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6. retro_chof_719 90.84 97.40
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7. retro_chof_1844 89.39 97.40
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8. retro_chof_1991 77.36 97.40
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9. retro_chof_2376 90.97 57.25
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10. retro_chof_2626 71.51 65.43
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11. retro_chof_2712 91.07 62.45
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Download FASTA sequences of all ENSCHOG00000005395 retrocopies