Parental gene:

PFDN5, ENSCAFG00000007016

Aliases:None
Description:Canis lupus familiaris prefoldin subunit 5 (PFDN5), mRNA. [Source:RefSeq mRNA;Acc:NM_001251949]
Organism:Dog (Canis familiaris)
Coordinates:27:1906132..1909613(-)


>ENSCAFG00000007016
ATGGCGCAGTCGGTTAACATCACGGAGCTGAACCTGCCGCAGCTAGAGATGCTCAAGAACCAGCTGGACCAGGAAGTGGA
GTTCCTGTCCACGTCCATCGCGCAGCTCAAGGTGGTGCAGACCAAGTACGTGGAAGCCAAGGACTGTCTGCACGTGCTCA
ACAAGAACAACGAGGGGAAAGAACTACTCGTCCCACTGACGAGCTCTATGTATGTCCCTGGGAAGCTACATGATGTGGAA
CATGTGCTCATCGATGTGGGAACAGGCTACTATGTAGAAAAGACAGCGGAGGATGCCAAGGACTTTTTCAAGAGGAAGAT
AGACTTTCTTACGAAGCAAATGGAGAAAATCCAACCAGCTCTGCAGGAGAAGCATGCCATGAAACAGGCTGTCATGGAGA
TGATGAGCCAGAAGATTCAGCAGCTCACAGCCCTGGGGGCAACTCAGGCGACGGCCAAGGCCTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 63 .38 RPM
SRP017611_brain 31 .60 RPM
SRP017611_kidney 123 .42 RPM
SRP017611_liver 45 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012402 ortholog_one2many 2 retrogenes
retro_amel_322, retro_amel_99,
Callithrix jacchus ENSCJAG00000018477 ortholog_many2many 6 retrogenes
retro_cjac_1590, retro_cjac_1614, retro_cjac_1707, retro_cjac_2274, retro_cjac_42, retro_cjac_993,
Dasypus novemcinctus ENSDNOG00000013002 ortholog_one2many 1 retrogene
retro_dnov_1994,
Echinops telfairi ENSETEG00000002111 ortholog_one2many 3 retrogenes
retro_etel_1815, retro_etel_372, retro_etel_950,
Felis catus ENSFCAG00000005871 ortholog_one2many 4 retrogenes
retro_fcat_1215, retro_fcat_1468, retro_fcat_1566, retro_fcat_828,
Homo sapiens ENSG00000123349 ortholog_one2many 1 retrogene
retro_hsap_515,
Gorilla gorilla ENSGGOG00000026308 ortholog_one2many 1 retrogene
retro_ggor_475,
Macropus eugenii ENSMEUG00000012110 ortholog_one2many 1 retrogene
retro_meug_1682,
Macaca mulatta ENSMMUG00000022030 ortholog_one2many 2 retrogenes
retro_mmul_1677, retro_mmul_428,
Mustela putorius furo ENSMPUG00000006059 ortholog_many2many 1 retrogene
retro_mputfur_18,
Mus musculus ENSMUSG00000001289 ortholog_one2many 1 retrogene
retro_mmus_3707,
Nomascus leucogenys ENSNLEG00000017706 ortholog_one2many 3 retrogenes
retro_nleu_1369, retro_nleu_1370, retro_nleu_1549,
Otolemur garnettii ENSOGAG00000009463 ortholog_many2many 2 retrogenes
retro_ogar_1820, retro_ogar_292,
Ochotona princeps ENSOPRG00000015638 ortholog_one2many 1 retrogene
retro_opri_394,
Procavia capensis ENSPCAG00000012413 ortholog_one2many 2 retrogenes
retro_pcap_132, retro_pcap_167,
Pongo abelii ENSPPYG00000004575 ortholog_one2many 1 retrogene
retro_pabe_229,
Pan troglodytes ENSPTRG00000005010 ortholog_one2many 1 retrogene
retro_ptro_384,
Sorex araneus ENSSARG00000006221 ortholog_one2many 1 retrogene
retro_sara_439,
Tupaia belangeri ENSTBEG00000016436 ortholog_one2many 4 retrogenes
retro_tbel_1068, retro_tbel_2415, retro_tbel_3132, retro_tbel_768,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_919 93.80 83.77
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2. retro_cfam_1382 98.70 100.00
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3. retro_cfam_1421 79.17 62.34
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4. retro_cfam_1639 68.61 88.31
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Download FASTA sequences of all ENSCAFG00000007016 retrocopies