Parental gene:

ENSCAFG00000006693

Aliases:None
Description:Small nuclear ribonucleoprotein-associated protein [Source:UniProtKB/TrEMBL;Acc:E2R1C4]
Organism:Dog (Canis familiaris)
Coordinates:24:18673624..18683317(+)


>ENSCAFG00000006693
ATGACTGTGGGCAAGAGCAGCAAGATGCTGCAGCACATCGACTATAGGATGAGGTGCATCCTACAAGACGGCCGGATCTT
CATTGGCACCTTCAAGGCTTTTGACAAGCATATGAATTTGATTCTCTGTGACTGTGATGAGTTCAGGAAAATCAAGCCAA
AGAACTCAAAACAAGCAGAAAGAGAAGAGAAGCGAGTCCTTGGTCTGGTGCTGCTTCGAGGGGAGAACCTGGTCTCAATG
ACGGTAGAGGGACCTCCTCCCAAAGATACTGGCATTGCCCGAGTGCCACTTGCTGGAGCTGCCGGGGGCCCAGGGATTGG
CAGGGCTGCTGGTAGAGGAATTCCAGCTGGTGTTCCAATGCCCCAGGCTCCTGCAGGACTTGCAGGGCCAGTCCGAGGGG
TTGGTGGGCCATCCCAGCAGGTGATGACCCCGCAGGGAAGAGGCACTGTGGCTGCTGCTGCCGCTGCTGCCACTGCCAGC
ATTGCAGGGGCCCCGACCCAGTACCCGCCCGGCCGTGGGGGTCCTCCCCCACCTATGGGCCGGGGGGCACCGCCTCCAGG
CATGATGGGCCCACCACCTGGCATGAGGCCTCCCATGGGCCCCCCAATGGGGATCCCTCCTGGTCGAGGAACTCCAATGG
GCATGCCCCCGCCGGGGATGCGGCCCCCTCCCCCGGGCATGCGAGGCCTCCTTTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 82 .02 RPM
SRP017611_brain 22 .55 RPM
SRP017611_kidney 72 .64 RPM
SRP017611_liver 21 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011353 ortholog_one2many 1 retrogene
retro_amel_1403,
Canis familiaris ENSCAFG00000010127 within_species_paralog 6 retrogenes
retro_cfam_1753, retro_cfam_1874, retro_cfam_2039, retro_cfam_627, retro_cfam_682, retro_cfam_752,
Callithrix jacchus ENSCJAG00000020971 ortholog_many2many 2 retrogenes
retro_cjac_172, retro_cjac_1739,
Dasypus novemcinctus ENSDNOG00000007896 ortholog_one2many 2 retrogenes
retro_dnov_2060, retro_dnov_2471,
Erinaceus europaeus ENSEEUG00000015568 ortholog_one2many 3 retrogenes
retro_eeur_312, retro_eeur_434, retro_eeur_6,
Felis catus ENSFCAG00000014447 ortholog_one2many 2 retrogenes
retro_fcat_1788, retro_fcat_1960,
Microcebus murinus ENSMICG00000016519 ortholog_one2many 4 retrogenes
retro_mmur_1012, retro_mmur_1478, retro_mmur_546, retro_mmur_861,
Myotis lucifugus ENSMLUG00000016951 ortholog_one2many 1 retrogene
retro_mluc_1725,
Mustela putorius furo ENSMPUG00000009283 ortholog_one2many 1 retrogene
retro_mputfur_1153,
Mus musculus ENSMUSG00000027404 possible_ortholog 3 retrogenes
retro_mmus_2938, retro_mmus_3450, retro_mmus_554,
Nomascus leucogenys ENSNLEG00000009206 ortholog_one2many 1 retrogene
retro_nleu_761,
Otolemur garnettii ENSOGAG00000016149 ortholog_one2many 4 retrogenes
retro_ogar_2197, retro_ogar_2841, retro_ogar_2918, retro_ogar_3236,
Ochotona princeps ENSOPRG00000007459 ortholog_one2many 2 retrogenes
retro_opri_697, retro_opri_72,
Pongo abelii ENSPPYG00000010841 ortholog_one2many 1 retrogene
retro_pabe_2265,
Pteropus vampyrus ENSPVAG00000017013 ortholog_one2many 1 retrogene
retro_pvam_289,
Rattus norvegicus ENSRNOG00000006961 possible_ortholog 2 retrogenes
retro_rnor_2825, retro_rnor_474,
Tupaia belangeri ENSTBEG00000010040 ortholog_one2many 3 retrogenes
retro_tbel_1117, retro_tbel_1171, retro_tbel_2839,
Tarsius syrichta ENSTSYG00000014498 ortholog_one2many 2 retrogenes
retro_tsyr_45, retro_tsyr_719,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_461 83.04 95.67
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2. retro_cfam_1268 85.17 100.00
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3. retro_cfam_1773 81.82 100.00
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Download FASTA sequences of all ENSCAFG00000006693 retrocopies