Parental gene:

PABPC4, ENSCAFG00000003081

Aliases:None
Description:poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Organism:Dog (Canis familiaris)
Coordinates:15:3242532..3305464(+)


>ENSCAFG00000003081
ATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTCTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCT
GTATGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGCT
ATGCCTACGTCAACTTCCAGCAGCCGGCCGACGCTGAGCGGGCCTTGGATACCATGAACTTTGATGTGATTAAGGGAAAG
CCAATCCGTATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAATGTCTTCATCAAGAATCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGAAACATTCTGTCTTGTAAGGTGGTGTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCTGACAAGGCCATCGAGAAGATGAACGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTGGGCAGATTCAAGTCTCGAAAAGAGCGGGAAGCTGAGCTTGGAGCCAAAGC
CAAAGAGTTCACCAATGTCTATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTCTTTAGCCAGT
TTGGTAAGACCCTAAGTGTCAAGGTGATGAGAGATCCCAGTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTACGAAAAG
CACGAGGATGCCAATAAGGCTGTGGAAGAGATGAATGGAAAAGAAATCAGTGGGAAAGTCATTTTTGTAGGCCGTGCACA
GAAGAAAGTGGAGCGGCAGGCGGAGTTAAAGCGGAAATTTGAACAGTTGAAACAAGAGAGAATTAGTCGGTATCAGGGGG
TGAATCTCTACATTAAGAACTTGGATGACACCATTGATGATGAGAAGTTAAGGAAAGAGTTTTCTCCTTTTGGATCAATC
ACCAGTGCAAAGGTAATGTTGGAGGATGGGAGAAGCAAAGGGTTTGGCTTTGTCTGCTTCTCATCTCCTGAAGAGGCGAC
CAAAGCAGTCACTGAGATGAATGGACGCATCGTGGGCTCCAAGCCACTGTATGTCGCCTTGGCGCAGAGGAAGGAAGAGA
GAAAAGCTCATCTGACCAACCAGTATATGCAGCGGGTGGCTGGAATGAGAGCGCTCCCTGCCAATGCCATCTTAAATCAG
TTCCAGCCTGCAGCTGGTGGTTACTTTGTGCCAGCAGTTCCACAGGCTCAGGGAAGACCTCCATACTACACCCCTAACCA
GTTAGCACAGATGAGGCCAAATCCACGCTGGCAGCAAGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCTATAC
GCCAGTCTGGGCCTCGTCCAGCTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACT
GCTCAGAGAGTCGGTGTGCCCACAGCCGTGCAGACCTTAGCACCTCGTGCTGCTGTCGCCGCTGCTGCCCCTCGGGCTGT
CGCACCTTACAAATATGCCTCCAGTGTCCGCAGCCCTCACCCCGCCATCCAGCCTTTGCAGGCCCCCCAGCCTGCCGTCC
ATGTACAGGGGCAGGAGCCCCTGACCGCCTCCATGCTGGCTGCAGCACCCCCCCAGGAGCAGAAGCAGATGCTGGGAGAA
CGTTTGTTCCCACTCATCCAAACCATGCATTCAAACCTGGCTGGAAAAATCACAGGCATGCTGCTGGAGATCGACAACTC
TGAGCTGCTGCACATGCTGGAGTCCCCTGAGTCTCTCCGCTCCAAGGTGGATGAAGCTGTGGCGGTTCTACAGGCTCATC
ATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCTGTTGCTGCTGCTACCTCTTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 34 .77 RPM
SRP017611_brain 23 .10 RPM
SRP017611_kidney 40 .15 RPM
SRP017611_liver 49 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011535 ortholog_one2one 2 retrogenes
retro_amel_107, retro_amel_676,
Bos taurus ENSBTAG00000017125 ortholog_one2one 3 retrogenes
retro_btau_1492, retro_btau_28, retro_btau_656,
Canis familiaris ENSCAFG00000018353 other_paralog 1 retrogene
retro_cfam_1972,
Choloepus hoffmanni ENSCHOG00000005327 ortholog_one2one 3 retrogenes
retro_chof_1150, retro_chof_1182, retro_chof_1274,
Equus caballus ENSECAG00000009396 ortholog_one2one 2 retrogenes
retro_ecab_2, retro_ecab_502,
Felis catus ENSFCAG00000015254 ortholog_one2one 2 retrogenes
retro_fcat_116, retro_fcat_545,
Loxodonta africana ENSLAFG00000000151 ortholog_one2one 3 retrogenes
retro_lafr_1144, retro_lafr_390, retro_lafr_597,
Microcebus murinus ENSMICG00000016633 possible_ortholog 1 retrogene
retro_mmur_675,
Myotis lucifugus ENSMLUG00000012068 ortholog_one2one 2 retrogenes
retro_mluc_228, retro_mluc_397,
Monodelphis domestica ENSMODG00000017657 ortholog_one2many 2 retrogenes
retro_mdom_1090, retro_mdom_1805,
Mustela putorius furo ENSMPUG00000014414 ortholog_one2one 2 retrogenes
retro_mputfur_152, retro_mputfur_546,
Mus musculus ENSMUSG00000011257 ortholog_one2many 7 retrogenes
retro_mmus_2006, retro_mmus_2326, retro_mmus_2327, retro_mmus_798, retro_mmus_801, retro_mmus_803, retro_mmus_805,
Rattus norvegicus ENSRNOG00000015642 ortholog_one2many 2 retrogenes
retro_rnor_175, retro_rnor_92,
Sarcophilus harrisii ENSSHAG00000018139 ortholog_one2one 1 retrogene
retro_shar_823,
Sus scrofa ENSSSCG00000003660 ortholog_one2one 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Tursiops truncatus ENSTTRG00000014340 ortholog_one2one 2 retrogenes
retro_ttru_1117, retro_ttru_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_45 67.12 57.69
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2. retro_cfam_837 65.68 58.64
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Download FASTA sequences of all ENSCAFG00000003081 retrocopies