Parental gene:

IDH1, ENSBTAG00000020527

Aliases:None
Description:Isocitrate dehydrogenase [NADP] cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9XSG3]
Organism:Cow (Bos taurus)
Coordinates:2:96941048..96962496(-)


>ENSBTAG00000020527
ATGTCTCAAAAAATCCAAGGCGGGTCTGTGGTAGAGATGCAAGGAGATGAAATGACACGGATCATTTGGGAGTTGATTAA
AGAGAAACTCATTTTTCCCTACGTGGAACTGGACCTGCACAGCTACGATTTAGGCATAGAGAATCGCGATGCCACCAACG
ACCAGGTCACCAAGGACGCTGCAGAAGCTATAAAGAAGTACAACGTTGGTGTCAAGTGTGCCACCATCACCCCCGATGAG
AAGAGAGTGGAGGAGTTCAAGTTGAAACAAATGTGGAAGTCTCCAAATGGCACCATCCGAAATATCCTGGGTGGCACTGT
CTTCAGGGAAGCTATTATCTGCAAAAATATACCCCGGCTTGTGAGCGGATGGGTAAAACCCATTATCATAGGTCGTCATG
CTTATGGGGATCAATATAGAGCAACCGATTTTGTTGTGCCGGGGCCTGGAAAAGTAGAGATATCCTACACACCAAGCGAT
GGATCCCCCAAAACGGTATACCTAGTACATAACTTCACAGAGAGTGGTGGTGTTGCCATGGGGATGTACAATCAAGATAA
GTCAATCGAAGATTTTGCACACAGTTCTTTCCAGATGGCTTTGTCTAAGAACTGGCCTTTGTATCTGAGCACCAAAAACA
CTATTCTGAAGAAATACGATGGACGTTTTAAAGACATCTTTCAGGAGATATATGACAAGCAGTACAAATCTGAGTTTGAA
GCTCAGAATATCTGGTATGAGCACAGGCTCATTGATGACATGGTGGCCCAAGCTATGAAATCGGAGGGGGGCTTCATTTG
GGCCTGTAAGAACTATGATGGGGACGTGCAGTCGGACTCCGTGGCCCAAGGTTATGGCTCTCTCGGCATGATGACCAGTG
TGCTGGTTTGTCCAGATGGCAAGACAGTAGAAGCAGAGGCTGCCCACGGGACTGTAACCCGTCACTACCGAATGTACCAG
AAAGGACAGGAGACATCGACCAATCCCATTGCTTCCATTTTTGCCTGGACCAGAGGCTTAGCCCACAGAGCTAAACTTGA
TAACAATAAAGAGCTCAGCTTTTTTGCAAAGGCTTTGGAAGAAGTCTGTATTGAGACCATTGAGGCTGGCTTCATGACCA
AGGACTTAGCTGCATGTATTAAAGGTTTACCCAACGTGCAACGTTCTGACTACTTGAATACATTTGAGTTCATGGATAAA
CTCGGAGAGAACCTGCAGTTAAAACTAGCCCAGGCCAAACTTTAA

Library Parental gene expression (RPM)
ERP005899_liver 158 .39 RPM
ERP005899_muscle 429 .70 RPM
SRP017611_brain 45 .04 RPM
SRP017611_kidney 213 .73 RPM
SRP017611_liver 125 .42 RPM
SRP030211_testis 63 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004574 ortholog_one2one 2 retrogenes
retro_chof_2158, retro_chof_897,
Cavia porcellus ENSCPOG00000013587 ortholog_one2one 1 retrogene
retro_cpor_1010,
Homo sapiens ENSG00000138413 ortholog_one2one 1 retrogene
retro_hsap_3554,
Gorilla gorilla ENSGGOG00000012619 ortholog_one2one 1 retrogene
retro_ggor_2400,
Microcebus murinus ENSMICG00000009797 ortholog_one2one 1 retrogene
retro_mmur_1364,
Macaca mulatta ENSMMUG00000016077 ortholog_one2one 1 retrogene
retro_mmul_1817,
Nomascus leucogenys ENSNLEG00000007143 ortholog_one2one 3 retrogenes
retro_nleu_1169, retro_nleu_2328, retro_nleu_3117,
Otolemur garnettii ENSOGAG00000014848 ortholog_one2one 4 retrogenes
retro_ogar_1488, retro_ogar_2270, retro_ogar_2925, retro_ogar_3057,
Pongo abelii ENSPPYG00000013125 ortholog_one2one 2 retrogenes
retro_pabe_2935, retro_pabe_926,
Pan troglodytes ENSPTRG00000012865 ortholog_one2one 1 retrogene
retro_ptro_2415,
Sus scrofa ENSSSCG00000023264 ortholog_one2one 1 retrogene
retro_sscr_549,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1235 89.90 100.00
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Download FASTA sequences of all ENSBTAG00000020527 retrocopies