RetrogeneDB ID:

retro_zmay_11

Retrocopy
location
Organism:Maize (Zea mays)
Coordinates:6:48567057..48568056(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:GRMZM2G327051
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GRMZM2G075290
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_zmay_11
ATGGCGCGCGCGCGTGACGCCGCCCTCCACCTCCTCCTCCTGGCAGCGGGCGCACTCCTACTTCTAGCCGTGGTGTCTCA
GGCCACCGTGGTGCCGCCGAGCGTTCCGGCGGGCGCCCCCGAGGACCCGCGGTGCCGCGCGCTGGCGCCGCGGCGTGGCG
CGCTGGCGGTGTACCCGAGCGACATGGAGCAACTGCAGTTCCTTCTCAACGCCAAGTTCGTGGAGGCGGAGTGGTTCCTG
CACGCGGCGCTGGGACGTGGCGTGGACTTCCTGGACCGCAACCTGTCCGGCGGCGGGCCTCGGCCGTCCGGGGCCAGGAA
GGCGGACCTGGACTTCCGCACAACCGAGGTCGCCGCCGAGCTCGGGTACCAGGAGGTGGGCCACATCCGCGCCATCAGGC
AGGCCGTGGGCGGGTTCCCGCGGCCGCCCATCGACCTCGGCGCCGACCGCTTCGCCATGGTCATGGACGACGCCATGGGC
GTCCGTCTGGACCCGCCGTTCGACCCGTACGCCGGGCCCGTCAACTTCCTGCTCGCCTCCTACGTGTTCCCGCACGTCAC
CGCCGCCGCCGCCATGGGCATCGGCCCCAGCCTCATGGGCTACGCCTCCAAGCGCCTCCAGGCGAGCATCCTGGCGGTGG
AGGCCGGGCAGGACGCGGTGATCCGGCTGCTGCTGTACCAGCGCGCCGACGATGCCGTCCCACCGTACCAGGGCCACACC
GTGGCCGACTTCACGCGCCGGATCTCCGACTGGCGCAACCGGATGTCCGGGTGCGGCGCCAAGGACGAAGGGGTCAAGGT
GCTGGACCGGCGGCAGGGCGCCGAGCGCCGCACCATAAGCAACATCCTCGGCGCCGGCGAGGACTCGCTCGGGTTCCAAC
GCACGCCTGCGGAGGTGCTCCGCATCCTCTACGGCTCGCGCAACGAGCAGATCCCCGGTGGGTTCCTCCCCAGGGGTGCC
AATGGAACCATCGCTAGAGGTTTCTTCCAGCTCGCGTAG

ORF - retro_zmay_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.49 %
Parental protein coverage: 84.7 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAVAAVSSAESSYVEPRRCQPPAPHI-AVAVFPYDVDPMQFALNLEYTEAEFFLHGAYGVGLDHLAPRLAL
A.....S......E..RC...AP...A.AV.P.D....QF.LN....EAE.FLH.A.G.G.D.L...L..
RetrocopyATVVPPSVPAGAPEDPRCRALAPRRGALAVYPSDMEQLQFLLNAKFVEAEWFLHAALGRGVDFLDRNLSG
ParentalGGPPPVGARKANLDEVTRRIVAEFGLQEVGHIRAIQRTVGGIPRPLIDLSAHNFARVMDEAFGTRLDPPF
GGP.P.GARKA.LD..T....AE.G.QEVGHIRAI...VGG.PRP.IDL.A..FA.VMD.A.G.RLDPPF
RetrocopyGGPRPSGARKADLDFRTTEVAAELGYQEVGHIRAIRQAVGGFPRPPIDLGADRFAMVMDDAMGVRLDPPF
ParentalDPYVNSLNFLLASYVIPYLGINGYVGTNPIVDGYQTKKLLAGLLGVEAAQDAVFRARLFERLGEAVPPYG
DPY....NFLLASYV.P........G..P...GY..K.L.A..L.VEA.QDAV.R..L..R...AVPPY.
RetrocopyDPYAGPVNFLLASYVFPHVTAAAAMGIGPSLMGYASKRLQASILAVEAGQDAVIRLLLYQRADDAVPPYQ