RetrogeneDB ID:

retro_vvin_56

Retrocopy
location
Organism:Grape (Vitis vinifera)
Coordinates:11:7216581..7217034(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:VIT_04s0023g00600
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_vvin_56
ACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGATCTTATTAATGAGAATGCGCTTGGAGTGCGGAATGCTGC
ACAAAGAAAGCTATTGGGTGAACTCGGCATTCCTGCTGAAGAGGCATCTATTGATCAGTTCACTCCACTGGGCTGCATGC
TTTACACGGCACCATCGGATGGCAAGTGGGGAGAGCATGAATTTGATTATCTACTCTTCACTGTCCGAGATACTAATGTG
AATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATATGTCCCGGAATGATCTGAAAGAGCTGTAGAGGAAAACGGATGT
TGGTGAGGAAGGTCTGAAGCTATTCCCTTGGTTCAGACTGGTGGTCGACAACTTCTTCTTCAAGTGGTGGGACCATGTTG
AGAAGGGGACCCTCCTTGAAGCTACAGATATGAAAACCATTCACAAGTTGACT

ORF - retro_vvin_56 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.08 %
Parental protein coverage: 51.54 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIPAEDAPVDQFTPLGRMLYKAPSDGKWGEHELDY
TNTCCSHPLYRES.LI.ENALGVRNAAQRKLL.ELGIPAE.A..DQFTPLG.MLY.APSDGKWGEHE.DY
RetrocopyTNTCCSHPLYRESDLINENALGVRNAAQRKLLGELGIPAEEASIDQFTPLGCMLYTAPSDGKWGEHEFDY
ParentalLLFIVRDVNVNPNPDEVADVKYVSRNDLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTLLE
LLF.VRD.NVNPNPDEVADVKY.SRNDLKEL.RK.D.GEEGLKL.PWFRLVVDNF.FKWWDHVEKGTLLE
RetrocopyLLFTVRDTNVNPNPDEVADVKYMSRNDLKEL*RKTDVGEEGLKLFPWFRLVVDNFFFKWWDHVEKGTLLE
ParentalAADMKTIHKLT
A.DMKTIHKLT
RetrocopyATDMKTIHKLT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide