RetrogeneDB ID:

retro_vpac_263

Retrocopy
location
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_3436:927714..927909(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MGST2
Ensembl ID:ENSVPAG00000005209
Aliases:None
Description:microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:7063]


Retrocopy-Parental alignment summary:






>retro_vpac_263
CAGAACTGAGTGGAATTTTACCCAATATTCATGACCACCTTCTGGATAGCGGCATGAACTCTGAGCAAGTTTCCCTGCTT
GTCTGGGTCTATCATACCTGTATGCTAGACACCAGTACTTCTGAGGATGTTCAGAAACTGTTCAGCAGAGGTCACTGGCA
TCTAGTTGCACCTGCGGATTTGGCCCTCATTGACT

ORF - retro_vpac_263 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.62 %
Parental protein coverage: 52.38 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalQNCVEFYPVFMITLWMA-GLYFNQV-FATCLGLVYVYARYQYFWGYSEDAKKR-ITGFRLSLGVLALLT
QN.VEFYP.FM.T.W.A.G....QV.F..CLGL.Y.YAR.QYF.G.SE....R..TG..L.L.....LT
RetrocopyQN*VEFYPIFMTTFWIA<GMNSEQV<FPACLGLSYLYARHQYF*GCSETVQQR<VTGI*LHLRIWPSLT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Vicugna pacos was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Vicugna pacos was not studied using ChIP-Seq data.