RetrogeneDB ID: retro_ttru_969

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_842:469095..470277(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000007967
• Aliases: None
• Description: None

Sequence

>retro_ttru_969
ATGACTTTCTATTTCACTGGTATTCGAAGCTTTCCTAAACTTTGGAAGAGCAACCCATACCTTGGGCTAGGCCCAGGTCA
CTCTTCTCTCTCTCTCTCTTTCTTAAAGACTGTTATGGCCTCAGGAACCAAGAGAAGTGGTTTTCTCTTAAAACAGTGTC
TCCACAGAATACTAAAGCAATGAATCTGCTGATAGCCAAAGCCAGATATGTCAGGAAAAAAGATGAGGGCAATAATAAGC
AAGTCTCTGCCGATTCTGCTCACATGTTTGCAGCTGGAGCGTTTAAGAAGAGATAACAGATGAATCCTCTGAGTAAAGAG
CACGTCTTGCCACCTGTGAAGAACATTATTCAAGTCCCGACAAAACCTTTGAATTCAGAAGAGTGGGATAAACTTAAGGA
AGAATTCAAAGAAAAGGCTAACTTTGAAAATTGGATCATTTCACAGATGGTTAAATGCCATATTTCTGTAGTTGTGGCCA
AATCTGTGCTGGCATAGGTAGCTGCAAAAAACAGTGGTATTGTAGGCTATGATTTGCTGGTCAAGTATTTGTATCTCTGT
GTTTTTCATAAGCAGACATCGAAATTATTGATGTCTATGAAATCATGAAAGCCAGATACAAGCGTTTAGAAGCTGGAGGG
TACACTCTTCTCATCCAGGGATTAATCCATACAGACAGATGGAGCGAGGCCTTGCTGCTGTTAGAGGACATCAAACAAGT
CATGATTCCTTAACAAAAGAACTATAGTGACTGTATCCAGGGAGCCCTCTTTCATCAAGATGTAAGTGTAGTTTGGAATT
TGTATCAAGAGTTGTTAGGTCATGATATTTTTCCTATGTTGGAAACATTAAAAGCCTTCTTTGATTTTGGAAAAGACATG
AAAGATGATCGCATTCAAACAAACTACATGACATTCTATTGTATCTAAGAAATAATCAGCTATATCCTGGGGAGTCATTT
GCACACAGTATAAAAGCATGGTTTGAAAGTGTTCCTGGAAAACAATGGAAAGCACAGTTCACCACAGTCCAGCAAAGTCG
TCAGTGTTTGGACTGTGGAAAAACTGTAGAGTCTATATTCACCTGAGTTCAGAAGAGTATGAATTTCTCAAGGGAAAAAA
TCATGAGGGATGTGATAGATGGAGGTGACCAATACAAAAAGACAGCACCTCGGGAACTTGAG

Alignment

ORF - retro_ttru_969 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.91 %
• Parental protein coverage: 67.29 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MAFYFTGIRSFPKLWKSNPYLGLGPG-HSFLSLFLK-DCYGIKNQEKWFSLKTVSPQNTKAMNLLVAKAR
          M.FYFTGIRSFPKLWKSNPYLGLGPG.......FLK.DCYG..NQEKWFSLKTVSPQNTKAMNLL.AKAR
Retrocopy MTFYFTGIRSFPKLWKSNPYLGLGPGXXXXXXXFLK<DCYGLRNQEKWFSLKTVSPQNTKAMNLLIAKAR

Parental  YVRKKDEGSSKQVSADSPHMFAAGAAKKRSQMNPPSKEHVLPPVKNIFQLPTKPLNSEEWDKLKEYFKEK
          YVRKKDEG..KQVSADS.HMFAAGA.KKR.QMNP.SKEHVLPPVKNI.Q.PTKPLNSEEWDKLKE.FKEK
Retrocopy YVRKKDEGNNKQVSADSAHMFAAGAFKKR*QMNPLSKEHVLPPVKNIIQVPTKPLNSEEWDKLKEEFKEK

Parental  ANFENWIISQMIKCRSSVDVAKSVLAWVAAKNNGIVGYDLLVKYLYLCVSHKQTS-EIIDVYEIMKDRYK
          ANFENWIISQM.KC..SV.VAKSVLA.VAAKN.GIVGYDLLVKYLYLCV.HKQTS.EIIDVYEIMK.RYK
Retrocopy ANFENWIISQMVKCHISVVVAKSVLA*VAAKNSGIVGYDLLVKYLYLCVFHKQTS<EIIDVYEIMKARYK

Parental  RLESGAYTLLIRGLIHTDRWREALLLLEDIKKVMIPSKKNYDDCIQGALFHQDVNVAWNLYQELLGHDIV
          RLE.G.YTLLI.GLIHTDRW.EALLLLEDIK.VMIP..KNY.DCIQGALFHQDV.V.WNLYQELLGHDI.
Retrocopy RLEAGGYTLLIQGLIHTDRWSEALLLLEDIKQVMIP*QKNYSDCIQGALFHQDVSVVWNLYQELLGHDIF

Parental  PMLETLKAFFDFGKDMKGDQ-YSNKLQDILLYLRNNQLYPGESFAHSIKTWFESVPGEHWKGQFTTVQQS
          PMLETLKAFFDFGKDMK.D...SNKL.DILLYLRNNQLYPGESFAHSIK.WFESVPG..WK.QFTTVQQS
Retrocopy PMLETLKAFFDFGKDMKDDR<HSNKLHDILLYLRNNQLYPGESFAHSIKAWFESVPGKQWKAQFTTVQQS

Parental  GQCLGCGKTIESIHL-SSEEYEFLKEKIMRDVIDGGDQYRKTTPQELK
          .QCL.CGKT.ESI.........F..EKIMRDVIDGGDQY.KT.P.EL.
Retrocopy RQCLDCGKTVESIFT*VQKSMNFSREKIMRDVIDGGDQYKKTAPRELE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_969 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_969 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000007967	1 retrocopy	retro_ttru_969 ,