RetrogeneDB ID: retro_ttru_944

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_739:268361..269292(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SIRT5
• Ensembl ID: ENSTTRG00000007786
• Aliases: None
• Description: sirtuin 5 [Source:HGNC Symbol;Acc:14933]

Sequence

>retro_ttru_944
ATGCCACCTCTCCGGATTGTCCCAAGCCACTTACTTGCCCAGCTGTATTGTGGACTGACCTCTCCAGCCTCTGCGCAAAC
CAAGATCTGCCTAACAATGGCTCGTCCAAGTTCAAATACGGCCGGGCTTCAGGAAGCTTTTTGCAAAAGCCAAGCACACA
GTCATCAATTTCAGGGGCTGGCGTCAGTGCTGAGAGTGGGGTTCCGACTTTCAGAGGAGCGGAAGGTTATTGGAGAAAAT
GGCAAGCTCAGGACCTGGCCACGCCTCAGGCCTTTGCCTGAAGCCCGTCCCAGGTGTGGGAGTCCTACCAGTACCGGCGG
GAAGCGGTGCAGAGCAAGGGGCCCGACGCCAGGCACCTGGCCATCGCCGAGCGTGAGGTGCGGCCCGACCGGTGGGCCGA
CGGGCTGTGGTCATCACCCGGAACACCAATGAGCTGCACCACGAGGCTGGCACCAAGAACCTTCTGGAAATCCATGGTAG
CTTATTTAAAACTCGATGTACCTTTTGTGGAGTTGTGGCTGAGAATTACAAGAGTCCAATTTGTCCAGTTTTATCAGGAA
AAGGGGTTTCCAGAACCTGAAGCTCAAGACGCCAGAATCCCAGTGTTGAAACTTCGCCGGTGTGAAGAGGCAGGCTGTGT
GGGCCTGCTGCGACCTCACGTGGGGTGGTTTGGAGAAAACCTGGACCCTGCCATCCCAGGGGAGGCTGACAGGGAGCTGG
CCCTCTGTGACTTGTGTCTGGTGGTGGGAACGTCCTCTGTGGTCTACCCTGCCGCCATGTTTGCCCCCCACGTGTCTGCC
CAGGGAGTAGAAGTGGCCGAATTTAACATGGGAACCACCCCAGTCATGAACAGGTTCACGTTTCATCTCCAGGGGCCTTG
TGGGACGACTTTCCTGAAGCCCTCGCTCCTCGTGAAACTGAAACTGTTTCT

Alignment

ORF - retro_ttru_944 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.05 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MPPLRIVPSCLLSQLHCGLKPPASIQTKICLTMARPSSSMAD-FRKCFAKAKHIVI-ISGAGVSAESGIP
          MPPLRIVPS.LL.QL.CGL..PAS.QTKICLTMARPSS..A..FRK.FAKAKH.VI.ISGAGVSAESG.P
Retrocopy MPPLRIVPSHLLAQLYCGLTSPASAQTKICLTMARPSSNTAG>FRKLFAKAKHTVI>ISGAGVSAESGVP

Parental  TFRGAGGYWRRWKAQDLATPQAFARNPSQVWEFYHYRREVVQSKEPNAAHLAIAECEARLGR-QGRRVTV
          TFRGA.GYWR.W.AQDLATPQAFA..PSQVWE.Y.YRRE.VQSK.P.A.HLAIAE.E.R..R..GRR..V
Retrocopy TFRGAEGYWRKWQAQDLATPQAFA*SPSQVWESYQYRREAVQSKGPDARHLAIAEREVRPDR<VGRRAVV

Parental  ITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGA-PEPETQDARIPVEKLPR
          IT.N..ELH..AGTKNLLEIHGSLFKTRCT.CGVVAENYKSPICP.LSGKG..PEPE.QDARIPV.KL.R
Retrocopy ITRNTNELHHEAGTKNLLEIHGSLFKTRCTFCGVVAENYKSPICPVLSGKGV>PEPEAQDARIPVLKLRR

Parental  CEEAACGGLLRPHVVWYGENLDPAIE-EAGRELALCDLCLVVGTSSVVYPAAMFAPEVSARGVPVAEFNI
          CEEA.C.GLLRPHV.W.GENLDPAI..EA.RELALCDLCLVVGTSSVVYPAAMFAP.VSA.GV.VAEFN.
Retrocopy CEEAGCVGLLRPHVGWFGENLDPAIPGEADRELALCDLCLVVGTSSVVYPAAMFAPHVSAQGVEVAEFNM

Parental  EATVAANRFRFHFQGPCGTT-LPEALAPHETETVS
          ..T...NRF.FH.QGPCGTT..PEALAP.ETETVS
Retrocopy GTTPVMNRFTFHLQGPCGTT<FPEALAPRETETVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_944 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_944 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019802	1 retrocopy	retro_cjac_2923,
Erinaceus europaeus	ENSEEUG00000005650	1 retrocopy	retro_eeur_209,
Homo sapiens	ENSG00000124523	1 retrocopy	retro_hsap_167,
Macropus eugenii	ENSMEUG00000008671	1 retrocopy	retro_meug_733,
Nomascus leucogenys	ENSNLEG00000000843	1 retrocopy	retro_nleu_977,
Pan troglodytes	ENSPTRG00000017736	1 retrocopy	retro_ptro_158,
Tursiops truncatus	ENSTTRG00000007786	1 retrocopy	retro_ttru_944 ,