RetrogeneDB ID: retro_ttru_922

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_672:201469..201693(+)
• Located in intron of: ENSTTRG00000016706

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C19orf43
• Ensembl ID: ENSTTRG00000005460
• Aliases: None
• Description: chromosome 19 open reading frame 43 [Source:HGNC Symbol;Acc:28424]

Sequence

>retro_ttru_922
GGATCTGAAGAGGAAGGGCAGCCCAGGCCCCACGCTCAGCTTCATGGGCAAGCGCACAGGTGGGAACAAACTAGCCCTGA
AGACAGGAACAGCAGCCAAGAAGAAGACGGAGAATGAGGTACTAACAAGTAAAGGTGACGCGTGGGCCAAGTACATGGCA
GAGGTGAAAAATTACAAAGCCCCACCAGTGCAGAGATGATGATGAAACTCGGCCCCTGATGAAA

Alignment

ORF - retro_ttru_922 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.12 %
• Parental protein coverage: 75.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GSEEEGRP-GPTLSFVGKRRGGNKLALKTGIVAKKQKTEDEVLTSKGDAWAKYMAEVKKYKA-HQCGDDD
          GSEEEG.P.GPTLSF.GKR.GGNKLALKTG..AKK.KTE.EVLTSKGDAWAKYMAEVK.YKA.HQC.DDD
Retrocopy GSEEEGQP>GPTLSFMGKRTGGNKLALKTGTAAKK-KTENEVLTSKGDAWAKYMAEVKNYKA>HQCRDDD

Parental  KTRPLVK
          .TRPL.K
Retrocopy ETRPLMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_922 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_922 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000025628	1 retrocopy	retro_mdom_188,
Rattus norvegicus	ENSRNOG00000003863	3 retrocopies	retro_rnor_1080, retro_rnor_2556, retro_rnor_2675,
Tursiops truncatus	ENSTTRG00000005460	1 retrocopy	retro_ttru_922 ,