RetrogeneDB ID: | retro_ttru_876 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_44:333464..333774(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | IGFBP7 | ||
| Ensembl ID: | ENSTTRG00000010845 | ||
| Aliases: | None | ||
| Description: | insulin-like growth factor binding protein 7 [Source:HGNC Symbol;Acc:5476] |
Retrocopy-Parental alignment summary:
>retro_ttru_876
AGCTGCGAGGCCATCGGAATCCCAACCCCTGTCCTCAACTGGAACAAGGTTAAAAGGGGTCACTATGGAGTTCAAAGAGC
AGAACTCTTGCTTGGTGACCGAGGCAACCTGGCCATTCAGACACGGGGTGGCCCAGAAAAGCATGAAGTAACTGGCTGGG
TGCTGGTATCTCCTTCTTAGTAAGGAAGATGCCAGAGAATATGAGTGCAATGCATCCAGTTCCCAAGGACAAGCTTCGTC
ATCAGCAAAAATTACAGTGGTTGAAGCCTTACATGAAATACCAGTGAAAAAAGGTGAAGGTGCTGAGCTG
AGCTGCGAGGCCATCGGAATCCCAACCCCTGTCCTCAACTGGAACAAGGTTAAAAGGGGTCACTATGGAGTTCAAAGAGC
AGAACTCTTGCTTGGTGACCGAGGCAACCTGGCCATTCAGACACGGGGTGGCCCAGAAAAGCATGAAGTAACTGGCTGGG
TGCTGGTATCTCCTTCTTAGTAAGGAAGATGCCAGAGAATATGAGTGCAATGCATCCAGTTCCCAAGGACAAGCTTCGTC
ATCAGCAAAAATTACAGTGGTTGAAGCCTTACATGAAATACCAGTGAAAAAAGGTGAAGGTGCTGAGCTG
ORF - retro_ttru_876 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.42 % |
| Parental protein coverage: | 72.03 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | SCEVIGIPTPVLIWNKVKRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWVLVSP-LSKEDAGEYEC |
| SCE.IGIPTPVL.WNKVKRGHYGVQR.ELL.GDR.NLAIQTRGGPEKHEVTGWVLVSP.LSKEDA.EYEC | |
| Retrocopy | SCEAIGIPTPVLNWNKVKRGHYGVQRAELLLGDRGNLAIQTRGGPEKHEVTGWVLVSP>LSKEDAREYEC |
| Parental | HASNSQGQASASAKITVVDALHEIPVKKGEGAEL |
| .AS.SQGQAS.SAKITVV.ALHEIPVKKGEGAEL | |
| Retrocopy | NASSSQGQASSSAKITVVEALHEIPVKKGEGAEL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_876 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_876 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000010845 | 1 retrocopy |
retro_ttru_876 ,
|