RetrogeneDB ID: retro_ttru_612

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2906:335217..335593(-)
• Located in intron of: ENSTTRG00000016988

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LEPROT
• Ensembl ID: ENSTTRG00000016296
• Aliases: None
• Description: leptin receptor overlapping transcript [Source:HGNC Symbol;Acc:29477]

Sequence

>retro_ttru_612
CTTGTGGCATTATCCTTCACTGGGGCTATCGGGCTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTACGGTGTTTA
CTGACCCTTGTTTGCCCTGATATTCCACGTCATCTCTCCCATCCCCTATTTTATTGCCAAACGAGCAACATATGACGCCG
ATGCAACAAGTAGTGCCTGTCGGGAACGGACTTATTTTTTCACTACCAGAAGGGTTGTTTCTGCCTTTGGATTTCCTGTT
ATTCTTGCTCAGGTGCCTGTGATCAAATGGGGAGCCTGTGGCCTGGTGCTGGCAGGCAATGCAGTGGTTTTCCTTACAAT
TCAAGGTTTTTTTCCTTATATTTGGAAGAGGAGATGATTTTAGCTGGGAGCAGTGG

Alignment

ORF - retro_ttru_612 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.89 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPYFIAKRATYDSDATSSACRELAYFFTTG
          LVALSF.GAIGLTFLMLGCALEDYGVY.PLF.LIFH.ISPIPYFIAKRATYD.DATSSACRE..YFFTT.
Retrocopy LVALSFTGAIGLTFLMLGCALEDYGVY*PLFALIFHVISPIPYFIAKRATYDADATSSACRERTYFFTTR

Parental  IVVSAFGFPVILARVAVIKWGACGLVLAGNAVIFLTIQG-FFLVFGRGDDFSWEQW
          .VVSAFGFPVILA.V.VIKWGACGLVLAGNAV.FLTIQG.FFL.FGRGDDFSWEQW
Retrocopy RVVSAFGFPVILAQVPVIKWGACGLVLAGNAVVFLTIQG>FFLIFGRGDDFSWEQW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_612 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_612 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mus musculus	ENSMUSG00000035212	1 retrocopy	retro_mmus_2291,
Tursiops truncatus	ENSTTRG00000016296	1 retrocopy	retro_ttru_612 ,