RetrogeneDB ID: | retro_ttru_560 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_2680:172098..172687(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | C11orf54 | ||
| Ensembl ID: | ENSTTRG00000001140 | ||
| Aliases: | None | ||
| Description: | chromosome 11 open reading frame 54 [Source:HGNC Symbol;Acc:30204] |
| Percent Identity: | 93.91 % |
| Parental protein coverage: | 62.42 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 1 |
| Parental | SCAEYSFHVPSLEELVGVLQKGLTDNFADVQVSVVDCPNLTKEPFTFPVKGICGKTRIAEVGGVPYLLPL |
| SCAEYSFHVPSLEELVGVL.KGLTDNFADVQVSVVDCPNLTKEPFTFPVKGICGKTRIAEVGGVPYLLPL | |
| Retrocopy | SCAEYSFHVPSLEELVGVLRKGLTDNFADVQVSVVDCPNLTKEPFTFPVKGICGKTRIAEVGGVPYLLPL |
| Parental | TNKKK-VYDLNKIAKEIQLPGAFVLGAGAGPFQTLGFNSEFMPVVQTESEHKPPVNGSYFAHVNSADGGC |
| .N....VYDLNKI.KEIQLPGAFVLGAGAGPF.TLGFNSEFMPVVQT.SEHKPPVNGSYFAHVNSADGGC | |
| Retrocopy | INXXX>VYDLNKITKEIQLPGAFVLGAGAGPFPTLGFNSEFMPVVQTKSEHKPPVNGSYFAHVNSADGGC |
| Parental | LLEKYSEKYHDFGFALLANLFASEGQPGKVIEVKAKRRTGKLNFVTCMRQTLEKHYG |
| LLEKYSEKYHD.GFALLANLFASEGQPGKVIEVK.KRR.GKLNFVTCMRQTLEKHYG | |
| Retrocopy | LLEKYSEKYHDLGFALLANLFASEGQPGKVIEVKSKRRPGKLNFVTCMRQTLEKHYG |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013446 | 1 retrocopy | |
| Cavia porcellus | ENSCPOG00000014146 | 1 retrocopy | |
| Monodelphis domestica | ENSMODG00000000412 | 2 retrocopies | |
| Otolemur garnettii | ENSOGAG00000002523 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000007819 | 1 retrocopy | |
| Tursiops truncatus | ENSTTRG00000001140 | 3 retrocopies |
retro_ttru_244, retro_ttru_334, retro_ttru_560 ,
|