RetrogeneDB ID: retro_ttru_377

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2068:260658..261789(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SENP2
• Ensembl ID: ENSTTRG00000008239
• Aliases: None
• Description: SUMO1/sentrin/SMT3 specific peptidase 2 [Source:HGNC Symbol;Acc:23116]

Sequence

>retro_ttru_377
AAAGAGAAATACCGAAGGTTATTAGAGTGACTTAAAGAAGGTGGTCATGGAAACTCTGTTCCTCCTGTAACTTCAACTCA
TCATAGTTCTCAAAGAAGTCAGATGGACACATTAAAGACCAAAGGCTGGGGGCAAGAGCAAAGTCATGGAGTCAAAACAA
CTCAGTTTGTTCCAAAACAATATAGAGTTGTTGAAACAAGGGGACCTCTACGGTCAATGAGAAGCGAAAAGAGGTGCTCA
AAGGGGAAAACTTCTGATACAGAGAAGACAGTTGGAATCAGACTTGAAAATGAAGGTAGGAGGGGACTCCAGCTGGAACC
TGACGTATCTGAAGAAGTGTCAGCCTGACTCCACCTGGGCAGTGGAAACAATGGCTTACTCAGGAGGAAGATGTCAATAC
TTGAGACAAAAGAAAAAAATTCCTCAAACAAAGAGAGGGATAAAAGGACATATGATCTTCTTGAACTTACAGAGGACATG
GAAAAGGAAATCAGTAATGCTCTAGGCCATGGCCCACAGGATGAGATCCTAAATAGTGCTTTCAAATTCCGAATCACTCG
AGGAGATATCCAGACCTTGAAGAACTATCACTGGCTCAATGATGAAGTCATTAATTTTTACATGAATCTCCTGGTGTAAA
GAAATAAAAAACAAGGGTATCTAGCACTTTATGCATTCAGTACTTTCTTCTATCCAAAATTAAAGTCTGGGGGTTACCAA
GCAGTGAAAAGATGGACCAAAGGGGTCAGTCTCTTTGAACAGGAACTTATTCTGGTGCCTATTCATCGGAAGGTACATTG
GAGCCTGGTAGTGACAGACCTAAGAAAAATGTGTCTTAAATATCTGGATTCTATGGGACAAAAGGGCCACAGGATCTGTG
AGATTCTCCTTCAGTATTTACAGGATGAAAATAAGACCAAAAGAAATATTGACCTGAATGTTTTAGAGTGGACCCACTAC
CACACGAAGGCACATGAGATTCCTCAGCAGTTGAATGGGAGTGATTGTGGAATGTTTACTTGTAAATATGCAGATTATAT
CTCTAGGGACAAACCCATCACATTTACTCAGCACCAGATGCCTCTGTTCCGGAAGAAGATGGTGTGGGAAATCCTTCATC
AGCAGTTGCTG

Alignment

ORF - retro_ttru_377 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.1 %
• Parental protein coverage: 67.93 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  REKYRRLLERLKEGGHGNTVPPVTSTHHSSQRSQMDTLKTKGWGQEQSHGVRTTQFVPKQYRVVETRGPL
          .EKYRRLLE.LKEGGHGN.VPPVTSTHHSSQRSQMDTLKTKGWGQEQSHGV.TTQFVPKQYRVVETRGPL
Retrocopy KEKYRRLLE*LKEGGHGNSVPPVTSTHHSSQRSQMDTLKTKGWGQEQSHGVKTTQFVPKQYRVVETRGPL

Parental  CSVRSEKRCSKGKLSDTEKTLGIRLENEGRRGLQLEPDLSEEVSARLRLGSGSNGLLRRKMSILETKEKN
          .S.RSEKRCSKGK.SDTEKT.GIRLENEGRRGLQLEPD.SEEVSA.L.LGSG.NGLLRRKMSILETKEKN
Retrocopy RSMRSEKRCSKGKTSDTEKTVGIRLENEGRRGLQLEPDVSEEVSA*LHLGSGNNGLLRRKMSILETKEKN

Parental  CSSKERDKRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL
          .S.KERDKRT.DLLELTEDMEKEISNALGHGPQDEIL.SAFK.RITRGDIQTLKNYHWLNDEVINFYMNL
Retrocopy SSNKERDKRTYDLLELTEDMEKEISNALGHGPQDEILNSAFKFRITRGDIQTLKNYHWLNDEVINFYMNL

Parental  LVERNKKQGYPALYAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELILVPIHRKVHWSLVVIDLRKKCLK
          LV.RNKKQGY.ALYAFSTFFYPKLKSGGYQAVKRWTKGV.LFEQELILVPIHRKVHWSLVV.DLRK.CLK
Retrocopy LV*RNKKQGYLALYAFSTFFYPKLKSGGYQAVKRWTKGVSLFEQELILVPIHRKVHWSLVVTDLRKMCLK

Parental  YLDSMGQKGHRICEILLQYLQDESKTKRNIDLNVLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRD
          YLDSMGQKGHRICEILLQYLQDE.KTKRNIDLNVLEWTHY..K.HEIPQQLNGSDCGMFTCKYADYISRD
Retrocopy YLDSMGQKGHRICEILLQYLQDENKTKRNIDLNVLEWTHYHTKAHEIPQQLNGSDCGMFTCKYADYISRD

Parental  KPITFTQHQMPLFRKKMVWEILHQQLL
          KPITFTQHQMPLFRKKMVWEILHQQLL
Retrocopy KPITFTQHQMPLFRKKMVWEILHQQLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_377 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_377 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000011230	1 retrocopy	retro_ecab_586,
Rattus norvegicus	ENSRNOG00000001773	1 retrocopy	retro_rnor_1568,
Tursiops truncatus	ENSTTRG00000008239	1 retrocopy	retro_ttru_377 ,
Tursiops truncatus	ENSTTRG00000013899	1 retrocopy	retro_ttru_1914,