RetrogeneDB ID: retro_ttru_33

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_26363:952..1534(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTTRG00000012989
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000016870
• Aliases: None
• Description: None

Sequence

>retro_ttru_33
ATGGGAGGCGCGGTGAGTGCTGGTGAAGACAACGACGAGCTGATAGACCATCTGAAGGCGGCGCAGTACATCCGCTCCGA
GCTGGTGGAGCAGGCCTTCCGAGCTGTTGACCGCGCCGACTATTCCCTCGAGGAGTTTAAGGAGAACGCGTACAAGGACC
TGGCGTGGAAGCACGGGAACATCCACCTCTCTGCTCCGTGCATCTATTCGGAGGTGATGGAGGCCCTGGACCTGCAGCCT
GGCCTTTCCTTCCTGAACCTGGGCAGCGGCACCGGCTACCTCAGCTCCATGGTGGGGCTCATCCTCGGTCCTTTTGGTGT
GAACCACGGGGTGGAACTCCATTCAGATGTGACAGAGTATGCGAAGCAGAAGCTGGACTTTTTCATCAGGACGAGTGACA
GCTTCGACAAGTTTGACTTCTGCGAGCCCTCCTTCGTCACCGGCAATTGCCTGGAGATCTCTCCAGGCTGCTCTCAGTAT
GACCGGGTGTACTGCGGGGCAGGCGTGCAGAAGCAGCACGAGGGGTACATGAAGAGCCTCCTCAAAGTCGGGGGCGTCCT
GGTCATGCCGCTGGAAGAGAAG

Alignment

ORF - retro_ttru_33 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.48 %
• Parental protein coverage: 53.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGGAVSAGEDNDELIDHLKAAQYIRSELVEQAFRAVDRADYYLEEFKENAYKDLAWKHGNIHLSAPCIYS
          MGGAVSAGEDNDELIDHLKAAQYIRSELVEQAFRAVDRADY.LEEFKENAYKDLAWKHGNIHLSAPCIYS
Retrocopy MGGAVSAGEDNDELIDHLKAAQYIRSELVEQAFRAVDRADYSLEEFKENAYKDLAWKHGNIHLSAPCIYS

Parental  EVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVTEYAKQKLDFFIRTSDSFDKFDF
          EVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVTEYAKQKLDFFIRTSDSFDKFDF
Retrocopy EVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVTEYAKQKLDFFIRTSDSFDKFDF

Parental  CEPSFVTGNCLEISPGCSQYDRVYCGAGVQKQHEGYMKSLLKVGGVLVMPLEEK
          CEPSFVTGNCLEISPGCSQYDRVYCGAGVQKQHEGYMKSLLKVGGVLVMPLEEK
Retrocopy CEPSFVTGNCLEISPGCSQYDRVYCGAGVQKQHEGYMKSLLKVGGVLVMPLEEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_33 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_33 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ictidomys tridecemlineatus	ENSSTOG00000010236	1 retrocopy	retro_itri_187,
Tursiops truncatus	ENSTTRG00000016870	1 retrocopy	retro_ttru_33 ,