RetrogeneDB ID: retro_ttru_1928

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_99115:229..1770(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KAT7
• Ensembl ID: ENSTTRG00000000472
• Aliases: None
• Description: K(lysine) acetyltransferase 7 [Source:HGNC Symbol;Acc:17016]

Sequence

>retro_ttru_1928
ATGCCGCAAAGGAAGAGGAATGCAGGCAGTAGTTCAGATGGAACCGAAGATTCCGATTTTTCTACAGATCTCGAGCACAC
AGACAGTTCAGAGAGTGATGGTACATCCCGGCCATCTGCCCGAGTCACCCGCTCCTTGGCCCGGCTAAGCCAGAGTTCCC
AAGATTCCAGTCCTGTTGGAAATTTGCAGTCTTTCAGTACCGAGGAACCTGCTTATTCTACCAGGAGAGTGACGCGTAGT
CAGCGGCAGCCTACCCCAGTGACCCTGAAAAATACCCGCTTCGGCAGACTCGTTCATCTGGCTCAGAAAGTGAGCAAGTG
GTTGACTTTTCAGATAGAGAAACTAAAAATACAGCTGATCATGTGAGTCTCCACCTCGAACGCCAGCTGGAAATGCCCCT
TCTTCTGAGTCTGATATAGACATCTCCAGCCCCAACGTGTCTCACCATGAGAGCACTGCCAAGGATGCGTCCCTGAAGGA
CTCAGGCAGTGATCTCTCTCATCGCCCCAAGCGCTGCCACTTCCGTGAAAGCTACAATTTCAGCATGAACGGTCCTACAC
CAGGCTGTGACTCCCTAGGACACCTTACAGGAAAACACGAGAGACATTTCTCTACCTCAGGATGCCCTCTCTATCGTAAC
CTCTCAGCTGATAAATGCAAGCTGAGAGCACAGAGCCAGGATAAGCAGAGAGAAGAAAGGATGCTGTCCCACAGGCAAGA
TGGCAACAACAGGCATGCAACCAGGCACCAGGTACCAACAGAGAGGCAGTTGCAATATAAGGAAAAGGTTGCTGAACTCA
GGAAGAAAAGAAATGGGGGGCTGAGCAAAGAACAGAAAGAGAAATATATGGAACACAGGCAGACCTATGGGAACACTCGG
GAACCTCTCCTGGAAAACCTGACTAGCGAGTATGACGGATCTTTTCGGAAGAGCACAAGCCCGGGCTTCAGAGGGTCTGG
AGAAGTTAAGGCTGCAAGGCCACATCACAGAGGGGAGCAACATGATTAAACCTATTGCTTTTTGTCGCTATGAGCTTGAT
ACTTGGTACCATTCTCCCTATCCTGAGGAATATGCATGACTGGGATGTCTTTACATGTGTGAATTCTGTTTAAAATACAT
GAAGAGCCAGACAATATTCCACTGACACATGGCTAAGTGTGTGTGGAAACACCCACCTGGAGATGAGATATAATGCAAAG
GTTCAATCTCTGTGTTTGAAGTGGATGGCAAGAAAAACAAGATCTACTGCCAAAAACTGTGCCTGTTGGCCAAGGTTTTT
CTGGACCACAAGACATTATACTATGATGTAGAACCCTTCCTGTTCTATGTTATGACAGAAGCAGACAACACTGGTTGTCA
CCTGATTGGATAGTTTTCCGAGGAAAAGAATTCATTCCTCCACCACAATGTATCCTGTATCCTTACCACACCTCAGTACA
TGAGACAGGGCTATGGCAAGATGCTCATTGATTTCAGTTATTTGCTTTCCAAAGAGGAAGAAAAAGTTGGCTCCCCAGAA
CGTCCACTCTCAGATCTGGGG

Alignment

ORF - retro_ttru_1928 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.19 %
• Parental protein coverage: 84.29 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  IPRRKRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSRRSARVTRSSARLSQSSQDSSPVRNLQSFGTEEP
          .P.RKRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSR.SARVTRS.ARLSQSSQDSSPV.NLQSF.TEEP
Retrocopy MPQRKRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSRPSARVTRSLARLSQSSQDSSPVGNLQSFSTEEP

Parental  AYSTRRVTRSQQQPTPVT-PKKYPLRQTRSSGSETEQVVDFSDRETKNTADHD-ESPPRTPTGNAPSSES
          AYSTRRVTRSQ.QPTPVT.P.KYPLRQTRSSGSE.EQVVDFSDRETKNTADH..ESPPRTP.GNAPSSES
Retrocopy AYSTRRVTRSQRQPTPVT<PEKYPLRQTRSSGSESEQVVDFSDRETKNTADHV<ESPPRTPAGNAPSSES

Parental  DIDISSPNVSHDESIAKDMSLKDSGSDLSHRPKRRRFHESYNFNMKCPTPGCNSLGHLTGKHERHFSISG
          DIDISSPNVSH.ES.AKD.SLKDSGSDLSHRPKR..F.ESYNF.M..PTPGC.SLGHLTGKHERHFS.SG
Retrocopy DIDISSPNVSHHESTAKDASLKDSGSDLSHRPKRCHFRESYNFSMNGPTPGCDSLGHLTGKHERHFSTSG

Parental  CPLYHNLSADECKVRAQSRDKQIEERMLSHRQDDNNRHATRHQAPTERQLRYKEKVAELRKKRNSGLSKE
          CPLY.NLSAD.CK.RAQS.DKQ.EERMLSHRQD.NNRHATRHQ.PTERQL.YKEKVAELRKKRN.GLSKE
Retrocopy CPLYRNLSADKCKLRAQSQDKQREERMLSHRQDGNNRHATRHQVPTERQLQYKEKVAELRKKRNGGLSKE

Parental  QKEKYMEHRQTYGNTREPLLENLTSEYDLDLFR-RAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYEL
          QKEKYMEHRQTYGNTREPLLENLTSEYD...FR.RAQARASE.LEKLRLQG.ITEGSNMIK.IAF.RYEL
Retrocopy QKEKYMEHRQTYGNTREPLLENLTSEYD-GSFR>RAQARASEGLEKLRLQGHITEGSNMIKPIAFCRYEL

Parental  DTWYHSPYPEEYARLGRLYMCEFCLKYMKSQTILRRHMAKCVWKHPPGDEIYRKGSISVFEVDGKKNKIY
          DTWYHSPYPEEYA.LG.LYMCEFCLKYMKSQTI...HMAKCVWKHPPGDEI..KGSISVFEVDGKKNKIY
Retrocopy DTWYHSPYPEEYA*LGCLYMCEFCLKYMKSQTIFH*HMAKCVWKHPPGDEI*CKGSISVFEVDGKKNKIY

Parental  CQNLCLLAKLFLDHKTLYYDVEPFLFYVMTEADNTGCHLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYG
          CQ.LCLLAK.FLDHKTLYYDVEPFLFYVMTEADNTGCHLIG.FS.EKNSFL..NVSCILT.PQYMRQGYG
Retrocopy CQKLCLLAKVFLDHKTLYYDVEPFLFYVMTEADNTGCHLIG*FSEEKNSFLHHNVSCILTTPQYMRQGYG

Parental  KMLIDFSYLLSKVEEKVGSPERPLSDLG
          KMLIDFSYLLSK.EEKVGSPERPLSDLG
Retrocopy KMLIDFSYLLSKEEEKVGSPERPLSDLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1928 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1928 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016955	1 retrocopy	retro_cfam_1246,
Callithrix jacchus	ENSCJAG00000007037	1 retrocopy	retro_cjac_4188,
Homo sapiens	ENSG00000136504	1 retrocopy	retro_hsap_4878,
Gorilla gorilla	ENSGGOG00000007469	1 retrocopy	retro_ggor_3048,
Nomascus leucogenys	ENSNLEG00000003201	1 retrocopy	retro_nleu_2557,
Oryctolagus cuniculus	ENSOCUG00000000668	1 retrocopy	retro_ocun_1427,
Pongo abelii	ENSPPYG00000008925	1 retrocopy	retro_pabe_3795,
Pan troglodytes	ENSPTRG00000009383	1 retrocopy	retro_ptro_3250,
Tursiops truncatus	ENSTTRG00000000472	2 retrocopies	retro_ttru_1724, retro_ttru_1928 ,