RetrogeneDB ID: retro_ttru_1893

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_97607:4927..5257(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6V0B
• Ensembl ID: ENSTTRG00000001290
• Aliases: None
• Description: ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b [Source:HGNC Symbol;Acc:861]

Sequence

>retro_ttru_1893
ATCTGCTACACCAGTTTTGACTTGGGCTCCCGCTTTGATGTGGCATGGTTCCTGACGGAGACTTCCCCCGTCATGTGGTC
AAACCTGGGCATTGGCCTAGCTATCTCCCTGTCTGTGGTTGGGACGGCATGGGGCATCTGCATCACTGGCTCTTGCATCA
CTGGGGAAGGGGTGAAGGCCCCAAGGATTAAGACCAAGAACCTGATCAGCATCATCTTCTGTGAGGCTGTGGCCGTCTAC
GGCATCATCATGGCGATTGTCATTAGCAACAGGGCTGAGCCTTGCAGTGCTCCTGACCCCAAAGCCATTGGCCATCAAAA
CTACCATGCA

Alignment

ORF - retro_ttru_1893 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.27 %
• Parental protein coverage: 60.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVS
          ICYT.FDLG.RFDVAWFLTETSP.MWSNLGIGLAISLSVVG.AWGI.ITGS.I.G.GVKAPRIKTKNL.S
Retrocopy ICYTSFDLGSRFDVAWFLTETSPVMWSNLGIGLAISLSVVGTAWGICITGSCITGEGVKAPRIKTKNLIS

Parental  IIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHA
          IIFCEAVA.YGIIMAIVISN.AEP.SA.DPKAIGH.NYHA
Retrocopy IIFCEAVAVYGIIMAIVISNRAEPCSAPDPKAIGHQNYHA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1893 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1893 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000001290	1 retrocopy	retro_ttru_1893 ,