RetrogeneDB ID: retro_ttru_1863

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_96072:139761..141009(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000005837
• Aliases: None
• Description: None

Sequence

>retro_ttru_1863
ATGGCTGGTCCCTTCTCTCGTCTCCTGTCTGCCCGCCCGGGGCTCAGACTCCTGGCTTTGGCTGGAGCTGGGTCTCTAGC
CGCTGGGTTTCTTCTCCGCTCGGAACCTGTTCGAGCCGCCGGCGAACGACGGAGGCTGTATCCCCCGAGTGCTGAGTACC
CAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCCCGGCTCTGCGACAAGACCACA
CCCACTGGTTGGACGCTAGATCAATGTATCCAGACTGGCGTGGACAACCCTGGCCACCCCTTCATCAAGACTGTGGGCGT
GGTAGCTGGTGATGAGGAGACCTATGAGGTATTTGCTGAGCTGTTTGACCCTGTGATCCAAGAGCGACACAATGGATATA
ACCCCCAGACGATGAAACATACCACTGACCTGGATGCCAGCAAGATCCGTTCTGGCTACTTTGATGAGAGGTATGTATTG
TCCACAAGAGTCAGAACCGGCCGAAGTATCCGGGGTCTCAGCCTGCCTCCAGCCTGCACCCGGGCAGAGCGACGAGAGGT
GGAGCGTGTTGTGGTAGAGGCACTGAGTGGCCTGAAGGGTGACCTGGCTGGACGCTACTATCGGCTCAGTGAGATGACAG
AGGCTGAGCAGCAGCAGCTAATTGATGACCACTTCCTGTTTGATAAACCTGTGTCCCCATTATTGACCGCAGCAGGAATG
GCTCGAGACTGGCCAGATGCTCGTGGAATCTGGCACAACAATGAGAAGAGCTTCTTGATCTGGGTGAATGAGGAGGATCA
TACACGGGTCATCTCCATGGAGAAGGGTGGCAACATGAAGAAAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTGG
AGCGGCTGATCCAGGAGCGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTA
GGCACTGGACTTCGGGCGGGAGTGCACGTCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTAGAGAA
CCTAAGACTCCAAAAACGTGGGACTGGAGGAGTGGACACAGCTGCCACAGGCGGCGTCATTGACATCTCTAATTTGGACC
GACTGGGCAAGTCAGAGGTGGAGCTGGTGCAGCTGGTCATCGATGGAGTAAACTATTTGATTGACTGTGAACGGCGTCTG
GAGAGAGGCCAGGATATCCGCGTCCCTCCGCCTCTCCCCAACAAGCAT

Alignment

ORF - retro_ttru_1863 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.28 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGPFSRLLSARPGLRLLALAGAGSLAAGFLLRSEPVRAAGERRRLYPPSAEYPDLRKHNNCMASHLTPA
          MAGPFSRLLSARPGLRLLALAGAGSLAAGFLLRSEPVRAAGERRRLYPPSAEYPDLRKHNNCMASHLTPA
Retrocopy MAGPFSRLLSARPGLRLLALAGAGSLAAGFLLRSEPVRAAGERRRLYPPSAEYPDLRKHNNCMASHLTPA

Parental  VYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVFAELFDPVIQERHNGYNPQTMKH
          VYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVG.VAGDEETYEVFAELFDPVIQERHNGYNPQTMKH
Retrocopy VYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGVVAGDEETYEVFAELFDPVIQERHNGYNPQTMKH

Parental  TTDLDASKIRSGYFDERYVLSTRVRTGRSIRGLSLPPACTRAERREVERVVVEALSGLKGDLAGRYYRLS
          TTDLDASKIRSGYFDERYVLSTRVRTGRSIRGLSLPPACTRAERREVERVVVEALSGLKGDLAGRYYRLS
Retrocopy TTDLDASKIRSGYFDERYVLSTRVRTGRSIRGLSLPPACTRAERREVERVVVEALSGLKGDLAGRYYRLS

Parental  EMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISMEKGGNMK
          EMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISMEKGGNMK
Retrocopy EMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISMEKGGNMK

Parental  KVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPLLSKDSRFPKILENLRL
          KVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVH.KLPLLSKDSRFPKILENLRL
Retrocopy KVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHVKLPLLSKDSRFPKILENLRL

Parental  QKRGTGGVDTAATGGIIDISNLDRLGKSEVELVQLVIDGVNYLIDCERRLERGQDIRVPPPLPNKH
          QKRGTGGVDTAATGG.IDISNLDRLGKSEVELVQLVIDGVNYLIDCERRLERGQDIRVPPPLPNKH
Retrocopy QKRGTGGVDTAATGGVIDISNLDRLGKSEVELVQLVIDGVNYLIDCERRLERGQDIRVPPPLPNKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1863 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1863 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019748	2 retrocopies	retro_etel_1343, retro_etel_2075,
Macaca mulatta	ENSMMUG00000007870	1 retrocopy	retro_mmul_240,
Tupaia belangeri	ENSTBEG00000012104	1 retrocopy	retro_tbel_4,
Tursiops truncatus	ENSTTRG00000005837	1 retrocopy	retro_ttru_1863 ,