RetrogeneDB ID: retro_ttru_1797

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_92024:7927..9280(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASCC2
• Ensembl ID: ENSTTRG00000006786
• Aliases: None
• Description: activating signal cointegrator 1 complex subunit 2 [Source:HGNC Symbol;Acc:24103]

Sequence

>retro_ttru_1797
GTGGCCTCAGCCCCTGAGGTCGTTGACATGGAGAAGCACCTCCGCCGAAGTGTTTTTCTCGCCTTCCTTCGCGTGTCCAC
TCGCAAGGAATCCAAAGATCACTTCATTTCCCCCTCTGTTTTTGGATATATCCTCTACAACAACTTCCAGTTTGACATCC
CAAAGATCCTGGACCTCTGCGTGCTCTTTGGAAAAGGCAACTCCCCGCTGCTGCAGAAGATGGTAGGAAACATCTTTATC
CAACAGCCAAGTTACTATAATGACCTGGATGAAAGCATGCCCACCATCCTTCAGGTCTCCAGCAATATCCTCCAGCACTG
TGGTTTGCAAGGGGACGGGGCCTGCACCACACCCCAGAAGCTTGAGGAGAGGGGCTGGCTGACCCCCAGCGACGTGCCTC
TCCTGGAATTAAAGGACATCGTTCTCTACCTTTCTGATACCTGCACCACACTCTGGGCCTTTCCGGATATCTTCCCTTTG
GCTTGCCCAACCTTCCAGAAACACGACTTCTGTTACAGGCTAGCTTCCTTTTATGAAATAGCAATTCCCGAACTGGAGTC
TGCAATTAAGAAGAGGAGGCTTGAAGATAGCGAGCTGCTAGGTGACCTGTGGCAGAGGCTCTCTCATTCCAGGAAGAAGC
TACTGGAGATTTTTCACATCCTCCTGAAGCAGATCTGCCTTCTCCCAGTCCTAGAAAGCAGCTGTGACAACGTTCAGGGC
TTCACTGAAGAGTTCCTTCAGATCTTCAGCTCCTTGCTGCAGAAGAGGTTTCTCTGAGACTCTGATGCACTCTTCCCTGT
GGCCGATGACGTCAGCCTGTTGCAGCAGTCCTCAGCCTTGGATGAGTCTCGGACCGCCTACAACCTCCAGGCAGTCGAGA
GTGCATGGGAAGGGGTGGACCGAAGGAAAGCCACCGATGCCAAAGACCCACCGGTGGCTGAGAATCCTAACGGGGTCGTG
GAGGCGGCAGAGGCGGTCAGCAGACCGTCATCGCTTCCCCAGGACTCGGAGGAAGAGGAGTGCCTGGGGGCAGCGGCTGC
TCCAGGCCCCGCCGCGTGCGGCGTGGAGCTGGACTCACTCATCTCCCAGGTGAAGGACCTGCTGCCAGACCTCGGCGAGG
GCTTCATCGTGGCCTGCCTGGAGCACTACAGCTATGACGCGGCACAGATGATCAACAACATCCTGGAGGGGCGGCTGGCC
CCTGCCCTCGGCCAGCTGGACCACGGCCTAGACAGACAGGTGAAGCCAGACCCGGCGCCCCTGCTGACGTCTCGTCACAA
CATCTCCCAGAATGTTGAGTTGGACGTGTTCAGCAGGGACTCAGTGGACCTGAGCCGGGTACACAAGGGCAGG

Alignment

ORF - retro_ttru_1797 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.18 %
• Parental protein coverage: 60.24 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAPAHEVDDMEKRLNRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFLFDIPKILDLCVLFGKGNSPL
          VA.A.EV.DMEK.L.RSVFL.FLR.ST.KESKDHFISPS.FG.ILYNNF.FDIPKILDLCVLFGKGNSPL
Retrocopy VASAPEVVDMEKHLRRSVFLAFLRVSTRKESKDHFISPSVFGYILYNNFQFDIPKILDLCVLFGKGNSPL

Parental  LQKMIGNIFLQQPSYYNDLDETMPTILQVFSNILQHCGLQGDGACTTPQKLEERGRLTPSDMPLLELKDI
          LQKM.GNIF.QQPSYYNDLDE.MPTILQV.SNILQHCGLQGDGACTTPQKLEERG.LTPSD.PLLELKDI
Retrocopy LQKMVGNIFIQQPSYYNDLDESMPTILQVSSNILQHCGLQGDGACTTPQKLEERGWLTPSDVPLLELKDI

Parental  VLYLCDTCTTLWAFLDIFPLACPTFQKHDFCYRLASFYEIAISELESAIKKRRLEDSKLLGDLWQRLSHS
          VLYL.DTCTTLWAF.DIFPLACPTFQKHDFCYRLASFYEIAI.ELESAIKKRRLEDS.LLGDLWQRLSHS
Retrocopy VLYLSDTCTTLWAFPDIFPLACPTFQKHDFCYRLASFYEIAIPELESAIKKRRLEDSELLGDLWQRLSHS

Parental  RKKLLEIFHILLNQICLLPVLESSCDNIQGFIEEFLQIFSSLLQEKRFLRDYDALFPVADDISLLQQASS
          RKKLLEIFHILL.QICLLPVLESSCDN.QGF.EEFLQIFSSLLQ.KRFL.D.DALFPVADD.SLLQQ.SS
Retrocopy RKKLLEIFHILLKQICLLPVLESSCDNVQGFTEEFLQIFSSLLQ-KRFL*DSDALFPVADDVSLLQQ-SS

Parental  ALDETRTAYILQAVESAWEGVDRRKATNAKDPPVAENPNGVVVVAEAVSRPSSLPQNSEEEECLGAAAAP
          ALDE.RTAY.LQAVESAWEGVDRRKAT.AKDPPVAENPNGVV..AEAVSRPSSLPQ.SEEEECLGAAAAP
Retrocopy ALDESRTAYNLQAVESAWEGVDRRKATDAKDPPVAENPNGVVEAAEAVSRPSSLPQDSEEEECLGAAAAP

Parental  GPTVCGVELDSLISQVKDLLPDLGEGFILACLEHYSYDPEQVINNILEGRLAPALSQLDRGLDRQVKPDV
          GP..CGVELDSLISQVKDLLPDLGEGFI.ACLEHYSYD..Q.INNILEGRLAPAL.QLD.GLDRQVKPD.
Retrocopy GPAACGVELDSLISQVKDLLPDLGEGFIVACLEHYSYDAAQMINNILEGRLAPALGQLDHGLDRQVKPDP

Parental  TPLLASRHNIFQNDEFDVFSRDSVDLSRVHKGR
          .PLL.SRHNI.QN.E.DVFSRDSVDLSRVHKGR
Retrocopy APLLTSRHNISQNVELDVFSRDSVDLSRVHKGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1797 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1797 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000006786	1 retrocopy	retro_ttru_1797 ,