RetrogeneDB ID: retro_ttru_1581

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_242:16326..17919(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PDE8A
• Ensembl ID: ENSTTRG00000004006
• Aliases: None
• Description: phosphodiesterase 8A [Source:HGNC Symbol;Acc:8793]

Sequence

>retro_ttru_1581
CAACAAAATGTGAAGATGATACCTGTCATTGGACAGGGAGGAACAATTAGACACTATGTGTCCATTGTCAGAGTGTGCAA
TGGCAACAATAAGGCTGAGAAAATAGCTGAATGTGTTCAGTCTGACACTCATACAGATAATCAGTCAGGCAAACATAACG
ACGGGAGAAAAAACTCACTAGATGTCAGAACTGCTGCCTCTCGAACAAGAAAAGTTTCCAGCCAGAGACGACGCTCCTCC
ATGGCCCGGATACATTCCATGTAGATTGAGGCGCCCATCACCAAGGCAATCGATATCATCAGTGCTGCCCAGGAAAGCAG
TCCCATGCCTGTGACAGAAGCCTTAGATCGTGTGCTGGAAATTCTAAGAACCACTGAATTATATTCACCACAATTTGATG
CTAAGGACAATGATCCTCATGCCATTGACCTTGTTGGGGACTTAATGTCTGATGTTTTGTGAAGACCATCCAGGAATGAG
TATGTTCTTTCAACAAAAAACCTTCAACAGGTTTCCAGCAGTGTAATCACCTCCACCTTCCTTCACAACGTCCAATCACA
GATAACTCGGGCCATGGAAAATGAGGAATTCTGGGACTTTGATAGTTTTGAACTGGAGGCTGCCACTCATAAAAGGCCTT
TGATTTATCTTGGTCTCAAAATATTCGCTCGCTTTGGAGTCTGTGAAGTCTTAAAATGCTCTGAGACAACGCTGAGATCA
TGGTTGCAAATTATCGAAGCCAATTATCATGCTTCTAACCCCTACCACAATTCTACACATTCTGCCGATGTGCTTCACGC
CACTGCCTATTTTCTCTGCAAAGAGAGGATAATGCAAACTTTAGATCCACTTGATGAGATCGCTGCCCTCATTGCAGCCA
CTGTCCATGACCTGGACCACCCCGGGAGAACCAACTCCTTCCTGTGCAATGCTGGGAGCGAGCTGGCCATTCTGTATAAC
GACACTGCTGTGCTCGAGAGCCACCTCACGGCCTTGGCCTTCCAACTGACCACTCGTGATGATAAATGCAACATCTTTAA
AAACATGGAGAGGGATGACTACCGGACTCTGCACCAGAGTATTATCGACATGGTCTTAGCCACAGAAATGACAAAGCACT
TTGAGCACGTCAACAAATTTGTCAATAGCATCAACAAGCCCTTGGCAGCATCAGAGGAAGATGGAGAAACTGGTAAAAAT
CAAGAAGCCATAATCACTATGCTCAGAACTCCAGACAACCGCAGTCTGATCAAACGAATGCTGATTAAGTGTGCTGATGT
GTCAAATCCCTGCTGACCCCTGGGAAAGTGCAGTATCTCAGAATCTGGTGCACGTATCTCAGAAGAATGTTTTTCTCAGA
CTGATGAAGAGAAGCGACAGGACTTGCCTGTAGTGATGTCAGTTTTTGACAGAAATACCTGCAGCATCCCCAAATCCCAA
ATCTCTTTCATTGACTATTTCATCACAGACATGTTTGCTGCTTGGGACGCCTTTGCAGACCTGCCTGAGTTAATGCAGCG
TCTTGACAACAATTTTAAATACTGGAAGGGACTGGATGAAATGAAGCTGCGGAGCCTCCGCCCACCTCCTGAA

Alignment

ORF - retro_ttru_1581 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.45 %
• Parental protein coverage: 63.61 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QQNVKILPVIGQGGKIRHYVSIVRACNGNNKATKIAECVQSDTHTDHQSGKHNDRRKSSLDVRTAASRTS
          QQNVK..PVIGQGG.IRHYVSIVR.CNGNNKA.KIAECVQSDTHTD.QSGKHND.RK.SLDVRTAASRT.
Retrocopy QQNVKMIPVIGQGGTIRHYVSIVRVCNGNNKAEKIAECVQSDTHTDNQSGKHNDGRKNSLDVRTAASRTR

Parental  KVSSQRRRSSTARIHSMKIEAPITKAINIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDDDPH
          KVSSQRRRSS.ARIHSM.IEAPITKAI.IISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKD.DPH
Retrocopy KVSSQRRRSSMARIHSM*IEAPITKAIDIISAAQESSPMPVTEALDRVLEILRTTELYSPQFDAKDNDPH

Parental  AIDLVGGLMSDVFRRPSRNEYVLSTKNLQQASSSVITPTSLHDIPSQITQAMENEESWDFDIFELEAATH
          AIDLVG.LMSDV..RPSRNEYVLSTKNLQQ.SSSVIT.T.LH...SQIT.AMENEE.WDFD.FELEAATH
Retrocopy AIDLVGDLMSDVL*RPSRNEYVLSTKNLQQVSSSVITSTFLHNVQSQITRAMENEEFWDFDSFELEAATH

Parental  KRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPYHNSTHSADVLHATAYFLCKERIKQT
          KRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPYHNSTHSADVLHATAYFLCKERI.QT
Retrocopy KRPLIYLGLKIFARFGVCEVLKCSETTLRSWLQIIEANYHASNPYHNSTHSADVLHATAYFLCKERIMQT

Parental  LDPLDEVTALIAATVHDLDHPGRTNSFLCNAGSELAILYNDTAVLERHHAALAFQLTTGDDKCNIFKNME
          LDPLDE..ALIAATVHDLDHPGRTNSFLCNAGSELAILYNDTAVLE.H..ALAFQLTT.DDKCNIFKNME
Retrocopy LDPLDEIAALIAATVHDLDHPGRTNSFLCNAGSELAILYNDTAVLESHLTALAFQLTTRDDKCNIFKNME

Parental  RNDYRMLRQSIIDMVLATEMQKHFEHVNKFVNSINKPLAALEEDGE-DKNQEAIITMLRTPDNRSLIKRM
          R.DYR.L.QSIIDMVLATEM.KHFEHVNKFVNSINKPLAA.EEDGE..KNQEAIITMLRTPDNRSLIKRM
Retrocopy RDDYRTLHQSIIDMVLATEMTKHFEHVNKFVNSINKPLAASEEDGETGKNQEAIITMLRTPDNRSLIKRM

Parental  LIKCADVSNPCRPLQQC--IEWAARISXXXXXXTDEEKRQDLPVVMPVFDRNTCSIPKSQISFIDYFITD
          LIKCADVSNPC.PL..C...E..ARIS......TDEEKRQDLPVVM.VFDRNTCSIPKSQISFIDYFITD
Retrocopy LIKCADVSNPC*PLGKCSISESGARISEECFSQTDEEKRQDLPVVMSVFDRNTCSIPKSQISFIDYFITD

Parental  MFAAWDAFVDLPELMQHLDNNFKYWKGLDEMKLRSLRPPPE
          MFAAWDAF.DLPELMQ.LDNNFKYWKGLDEMKLRSLRPPPE
Retrocopy MFAAWDAFADLPELMQRLDNNFKYWKGLDEMKLRSLRPPPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1581 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1581 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000004006	1 retrocopy	retro_ttru_1581 ,