RetrogeneDB ID: retro_ttru_1407

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_112559:330432..330807(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TSACC
• Ensembl ID: ENSTTRG00000001408
• Aliases: None
• Description: TSSK6 activating co-chaperone [Source:HGNC Symbol;Acc:30636]

Sequence

>retro_ttru_1407
TTGGAGCAGCGTTCTAGTCATCCTACTAACAGAAGAGCCAAAGAGGAAGGTAATGCTGTGCCTCTTTGTCGAGCCAAACC
CTCCCCCAGCTTTATTAAACTTCAAGCAAGTTCCCCACCAGCCACTTTCCTGAAAATCCTGGCAACAAAGCTGCCCTCAG
GAATTGAGCACAAGCCCAAGGAATGCCTAGGACTCCTAGAATGTATGTGTGCCAATCTCCAGCTTCAGACCCAGCTTGCC
CAACAACAGATGGCTATTTTGGAAGATCTACAAGCATCCATGACACAACTGGCTCCTGGGAGAGAAAGCAAGAACTCTTC
TCTCCCAGCCTTATCTCGCAATCTGTTGTTAAATCTCCTGCCCCAATTCAGTAAA

Alignment

ORF - retro_ttru_1407 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.46 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEQRSSHPTNRRVPAKEEGNAVPLCRAKPTPSFINLQASSPPATCLKIPATKLSSA-DHKPKECLGLLEC
          .EQRSSHPTNRR..AKEEGNAVPLCRAKP.PSFI.LQASSPPAT.LKI.ATKL.S...HKPKECLGLLEC
Retrocopy LEQRSSHPTNRR--AKEEGNAVPLCRAKPSPSFIKLQASSPPATFLKILATKLPSGIEHKPKECLGLLEC

Parental  MYASLQLETQLAQQRMAIFENLQASMTQLAPGRESQNSSLPTLSCNLLLNHLPQFSK
          M.A.LQL.TQLAQQ.MAI.E.LQASMTQLAPGRES.NSSLP.LS.NLLLN.LPQFSK
Retrocopy MCANLQLQTQLAQQQMAILEDLQASMTQLAPGRESKNSSLPALSRNLLLNLLPQFSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1407 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1407 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000004391	1 retrocopy	retro_mputfur_237,
Tursiops truncatus	ENSTTRG00000001408	1 retrocopy	retro_ttru_1407 ,