RetrogeneDB ID: retro_tsyr_981

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_26240:17278..17715(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ROPN1L
• Ensembl ID: ENSTSYG00000013823
• Aliases: None
• Description: rhophilin associated tail protein 1-like [Source:HGNC Symbol;Acc:24060]

Sequence

>retro_tsyr_981
ATGCCTCTTCCCGACACCATGTTCTGCGCGCAGCAGATCCCCATTCCCCTGGAGCTGCTGGACATCCTGAAGCAGTTCAC
CAAGGCCGTCATCCGCACTCAGCCCACCGACGTGCTGCGGTGGTCCGCGGGATATTTTTCAGCTTTGTCCAGAGGAGAGC
CACTTCCTGTAAAGGACAGACTCGAATTGCCCGTGGCCACCCAAAAGACAGACACAGGCCTGACTCGAGGGTTCCTCAAA
GTTTTGCACAAGCAGTGCAACCACATGCAATACGTGGAATTAGCGGATCTTAAGCACAAGTGGAAAAACCTATGCCTGCC
AGTAGAAAAATTCAAAGCTCTCTTAGAATTGGATCCTCACGAAAACATAACTGAGGTGGATAAATTTTTTAGCGCTTGGC
TGTAGCATGCTCAGTGGGTTCTCTAAACACTGCCATG

Alignment

ORF - retro_tsyr_981 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.84 %
• Parental protein coverage: 63.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MPLPDAMFCAQQIPIPPELPDILKQFTKAAIRTQPTDVLRWSAGYFSALSRGEPLPIKDRLELPVATQKT
          MPLPD.MFCAQQIPIP.EL.DILKQFTKA.IRTQPTDVLRWSAGYFSALSRGEPLP.KDRLELPVATQKT
Retrocopy MPLPDTMFCAQQIPIPLELLDILKQFTKAVIRTQPTDVLRWSAGYFSALSRGEPLPVKDRLELPVATQKT

Parental  DTGLTQGLLKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENIIE-WIKFLALGCSMLG-
          DTGLT.G.LKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENI.E.WI.FLALGCSML..
Retrocopy DTGLTRGFLKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENITE>WINFLALGCSMLS>

Parental  GSLNTAM
          GSLNTAM
Retrocopy GSLNTAM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_981 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000013823	3 retrocopies	retro_tsyr_423, retro_tsyr_701, retro_tsyr_981 ,