RetrogeneDB ID: retro_tsyr_944

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_250400:355..739(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM98C
• Ensembl ID: ENSTSYG00000000918
• Aliases: None
• Description: family with sequence similarity 98, member C [Source:HGNC Symbol;Acc:27119]

Sequence

>retro_tsyr_944
GCGCCACAGTCTCTGTCCTCAAGCCTGGAGGTCAGTACTGCTGCCTCCTTCTAAAGCACCTCAGCCTCACAATACTAGCT
TTCCACTGGAGTGATTGGGCCCAAGGAAAGCCATGAAGGTTGCACCAATCCCGATTCCAAAGGTTTTAACCCCAGAATTG
GACCGTCCCATCAAACATGTCTTGGCTACCCAAGCAGACCTACCTCAGCTTGTCCCAGCCCCCAGTGTGGCCACTCACAG
AGGAGCCTCTGTGCCATCAACATGGTGCTTATAGGGGTTGGGATGAGAAGGGTGTGCTCACATGAGTTGGGCATTCCCAG
ACCTAGTTTGCAGAGTCACAGAAATGATGGGGATGGGTGGAAGACAGGCAGCAAAAGTATAGGG

Alignment

ORF - retro_tsyr_944 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.8 %
• Parental protein coverage: 57.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ALESLSQSLR-DQYCCRRSLLLKRLDVTMSAFHWSDRAEAQGK-AMKAVLIPIREVLTAESDISIAHVLA
          A..SLS.SL...QYCC...LLLK.L..T..AFHWSD...AQGK.AMK...IPI..VLT.E.D..I.HVLA
Retrocopy APQSLSSSLE<GQYCC---LLLKHLSLTILAFHWSD--WAQGK<AMKVAPIPIPKVLTPELDRPIKHVLA

Parental  ARADLSRLVPATSVAARRG-TRCAINKVLMGNVPDRGGRPNELEAPMPSWRSRREDGGGRKTGRQGWG
          ..ADL..LVPA.SVA..RG...CAIN.VL.G.V..R.....EL..P.PS..S.R.DG.G.KTG....G
Retrocopy TQADLPQLVPAPSVATHRG<SLCAINMVLIG-VGMRRVCSHELGIPRPSLQSHRNDGDGWKTGSKSIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_944 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000000918	1 retrocopy	retro_tsyr_944 ,