RetrogeneDB ID: retro_tsyr_902

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_234002:25..610(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRT14
• Ensembl ID: ENSTSYG00000014310
• Aliases: None
• Description: keratin 14 [Source:HGNC Symbol;Acc:6416]

Sequence

>retro_tsyr_902
GGAGGCCGACGGGTGTTGGACGAGCTGACCCTGGCCAGGATCGACCTGGAGATGCAGATCAAAGGCCTGAAAGAGGAGCT
GAGCTACCTAAAGAAGAACCATGAGGAGGATATCAGCGTCCTGAGGGGCCAGGTGGGTGGCCAGGTTAGTGTGGAGGTGG
ATTCTGCTCCCGGCATTGATCTCGCCAAGATCCTGAGCGACATGCGAAGCCAATATGAAGTCATGGCTGAGCAAAACCGG
AAGGATGCGTAAGCCTGGTTCACCAGCCGGACTGAGGAGCTGAATTGGGAGGTTGCTGGCCACACCGAGCAGCTCCAGAT
GAGCAAGTCCGAAGTCACCGACCTGCGGCGCACCCTCCAAAGCCTGGAGATCGAGCTGCAGTCGCAGCTCAGCATGAAAG
CCGCCCTGGAAGGCACACTGGCGGAAACCGAGGCCCGCTTCGGTGCCCAGCTGGCGCAGATCCAGGCCCTGATTGGCAAC
ATCGAGACCCAGCTGGGTGATGTGCGCACGGACAGTGAGCGGCAGAACCAGGAGTACCGGCGGCTCATGGACATCAAATC
GCGGCTGGAGCAGGAGATTGCCACC

Alignment

ORF - retro_tsyr_902 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.13 %
• Parental protein coverage: 65.88 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GLRRVLDELTLSRADLEMQIESLKEELAYLRKNHEEEMNSLRGQVGGDVNVEMDAAPGVDLSRVLNEMRD
          G.RRVLDELTL.R.DLEMQI..LKEEL.YL.KNHEE....LRGQVGG.V.VE.D.APG.DL...L..MR.
Retrocopy GGRRVLDELTLARIDLEMQIKGLKEELSYLKKNHEEDISVLRGQVGGQVSVEVDSAPGIDLAKILSDMRS

Parental  QYEKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQNLEIELQSQLSMKASLENSL
          QYE.MAE.NRKDA..WF.S.TEELN.EVA...E..Q..KSE...LRRT.Q.LEIELQSQLSMKA.LE..L
Retrocopy QYEVMAEQNRKDA*AWFTSRTEELNWEVAGHTEQLQMSKSEVTDLRRTLQSLEIELQSQLSMKAALEGTL

Parental  EETKGRYCMQLAQIQEMISSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT
          .ET..R...QLAQIQ..I...E.QL...R...E.QNQEY..L.D.K.RLEQEIAT
Retrocopy AETEARFGAQLAQIQALIGNIETQLGDVRTDSERQNQEYRRLMDIKSRLEQEIAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_902 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007573	1 retrocopy	retro_chof_1742,
Tarsius syrichta	ENSTSYG00000013056	1 retrocopy	retro_tsyr_571,
Tarsius syrichta	ENSTSYG00000014310	1 retrocopy	retro_tsyr_902 ,