RetrogeneDB ID:

retro_tsyr_871

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_22513:22463..22819(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V1G2
Ensembl ID:ENSTSYG00000007314
Aliases:None
Description:ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 [Source:HGNC Symbol;Acc:862]


Retrocopy-Parental alignment summary:






>retro_tsyr_871
ATGGCCAGTCAGTTCCAGGGTATCCAGCAGCTTCTGCAAGCTGAGAAGTGGGTGGCTGAGACGGTGGCAGATGCCAGAAA
AAAGGAAGTCCTGACGACTGAAGCAGGCAAAAGAGGAGGCACAGATGGAGGTTAGAGTAATAACGTAGAGAGCGAGAGCA
GGAATTCCAGCGCAAGCAGCAGGTGGCCATGGGCTCCCAGGGGAACCTGTCGGCTGAGGTGGAGCAGGTTACAAGGTGCC
AGGTGCAGGGTATGCAGAGCTCCCAACAGAGAAACCGAGAGCGTGTCCTGGCCCAACTTCTTGGCATGGTTTGCGACGTC
AGGTCCAAGGTTCGCCCCAACTACTGGATTGTTGCC

ORF - retro_tsyr_871 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.5 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMASQSQGIQQLLQAEKRAAEKVADARK-RKARRLKQAKEEAQMEVEQY-RREREQEFQSKQQAAMGSQGN
MASQ.QGIQQLLQAEK..AE.VADARK.RK..RLKQAKEEAQMEV....RREREQEFQ.KQQ.AMGSQGN
RetrocopyMASQFQGIQQLLQAEKWVAETVADARK>RKS*RLKQAKEEAQMEVRVI>RREREQEFQRKQQVAMGSQGN
ParentalLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCNVRPQVHPNYRIAA
LSAEVEQ.TR.QVQGMQSSQQRNRERVLAQLLGMVC.VR..V.PNY.I.A
RetrocopyLSAEVEQVTRCQVQGMQSSQQRNRERVLAQLLGMVCDVRSKVRPNYWIVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.