RetrogeneDB ID: retro_tsyr_799

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_2045:23481..24102(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NEU1
• Ensembl ID: ENSTSYG00000001850
• Aliases: None
• Description: sialidase 1 (lysosomal sialidase) [Source:HGNC Symbol;Acc:7758]

Sequence

>retro_tsyr_799
AAACAGCGGGAACCACAGAAGGGCCACTTCCTTGTTTGTGGCCATGGGACGCTGGAGCAGGTTGGGGTCTTCTGTCACCT
CAGCAATGATCACAGTGCTGCCTGGTGCTATGGGTGTGGGGTCAGCGGCATCCCCTATGGCCAGCCCAAGTGAGAAAATA
ATTTCAACCCTGATGAATGCCAGTTCTGTGAGCTCCCAGATGGCTCACTCGTCATCAACACTCAGAACAAGAACAATTAC
CACTGCCATTGCCAGATTGTCCTCCACAGTTATTACATCTGTGATACACTAAGGCCCCGCAATGTGACCTTTGACCCTGA
GCTCATAGACCCCCGTGGTAGCTGCAGGTGCTGCAGCTACCAGCTCCGGCATTGTCTTCCCCTCCAACCCAGTGCATCCA
GAGTTCCAAGTGAACCTGATCCTGCACTGGAACTTCAGCGGTGGTACCTCATAGCAGAAAGAGATGGTCCAGCTATGTCC
AGTGCCCACTGGCTACTCATCTGGCAGCCCTGGAGGGCAGCATGGACAGAGAGGAGCAGCCCTTCCCCTCCTGTATGAGA
AAGACCAGACCACTACACAGAGAGCATCCCCATGGCCAAAGTCAGCATGTATGGGACGCTG

Alignment

ORF - retro_tsyr_799 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.51 %
• Parental protein coverage: 50.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KQREPQKGRLIVCGHGTLERDGVFCLLSDDHGASWRYGSGVSGIPYGQPKRENDFNPDECQPYELPDGSV
          KQREPQKG...VCGHGTLE..GVFC.LS.DH.A.W.YG.GVSGIPYGQPK.EN.FNPDECQ..ELPDGS.
Retrocopy KQREPQKGHFLVCGHGTLEQVGVFCHLSNDHSAAWCYGCGVSGIPYGQPK*ENNFNPDECQFCELPDGSL

Parental  VINARNQNNYHCHCRIVLRSYDACDTLRPRDVTFDPELIDPVGD-AWAVATSSGIVFFSNPGRLKL-VNL
          VIN..N.NNYHCHC.IVL.SY..CDTLRPR.VTFDPELIDP.G..A.A.ATSSGIVF.SNP......VNL
Retrocopy VINTQNKNNYHCHCQIVLHSYYICDTLRPRNVTFDPELIDPRGS>AGAAATSSGIVFPSNPVHPEFQVNL

Parental  TLRWSFSNGTSWRKETVQLWPGPSGYSSLAAVEGSMDGKEQTPQLYVLYEKGR-NRYTESISVAKVSVYG
          .L.W.FS.GTS..KE.VQL.P.P.GYS......G...G......L..LYEK.....YTESI..AKVS.YG
Retrocopy ILHWNFSGGTS*QKEMVQLCPVPTGYS--SGSPGGQHG-QRGAALPLLYEKDQ<DHYTESIPMAKVSMYG

Parental  TL
          TL
Retrocopy TL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_799 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000001850	1 retrocopy	retro_tsyr_799 ,